Cmes058443.1
Basic Information
- Insect
- Cybosia mesomella
- Gene Symbol
- clz9
- Assembly
- GCA_946251875.1
- Location
- CAMIUH010002512.1:121207-124053[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-07 5.7e-05 24.7 0.0 1 39 8 45 8 50 0.88 2 2 9.1 2.6e+03 0.2 0.0 24 45 77 98 75 98 0.86
Sequence Information
- Coding Sequence
- ATGGCGcctattaaaaattatactcCTAAACAAATGGGAGATGCCATCGAGGCGGTACAAGGTGGTGAATCTGTAGCGGCTGCAGCAAAGCGCTTTGGAGTTCCGCGGATCACtttatacaacaaaatatcagGTAAAAGCCCCATGCAATGTAGTATGGGACCAACTACTGTACTAACAAGTACGGAAGAGGATTTGTTGGTAAAGTGGCTTTCAGCGATGGCTGAAAGAAGATTTCCTATCTCCAAAGAAACTCTCCTAGATAGTGTTCAGCGGATCATCACAGTGCAAAACAAATCCAATCCTTTCACGCAAAATAGACCAGGTAGAAAATGGTTTGCATCATTCTTAAGAAGACATCCCATAATAGCACAAAGAACAGCAGAAAATTTAACCGCTGCACGAGAGAATGTGACTGAAGAACAAATAGTCTCCTGGTTTCGAGAGATACACGAATATTTAACATCTGTCGATTTGCATCACGTGCTCGAAGATCCAAGCAGAGTTTTTAACACTGACGAAAGCGCATTCTTTCTTTCACCAAAACCTGGACAAGTGCTTGTGAAGCGGGGTGAGAAACATGTATATGCTGCAAGTGGCGATGAAAAGGAGAATTTGACAGTTTTGGTGACTGCGAATGCTGCCGGAAAACTTGCACCGCCGATGATAGTTTTCGCTTATGAAAGGATCCCAGCCAACATTGCTAACGGTGTGCCGGAAGATTGGGGCATAGGTAAGTCCGAGAGTGGTTGGATGTGTAGCGAGACCTTTTATGAATACATTACCAGTATTTTCAATCCTTGGCTGGTAAAAGAACAGATTCAAAAACCAATTCTGTTTTTCGTAGATGGTCACAAGTCCCATCTAACACTTCAACTGTCGCAGTTTTGTTCTGAAAACGGTATTGAAGTGATTGCCTTATACCCAAACTCGACCCACATACTTCAACCTATGGACATTTCCGTATTTAGGCCGTTAAAAGTATTCTTTCGAAAAGAAGTTATTGCGTGGAAAATGGAAAACATGGGGAACAAACTCAAGAAAGAAAATTTTGCTCCagtttttaaaaaagcattgGACCGAATAACAGAAGACtgtgttaaaaatggtttccgTGGTGGGGGATTGTATCCTTTTGGACCAGAATATATAGACATGACAAAATTTGGGAATAAAAAATCAACTATTTCAGAACCAAATGAAGGAAAAGATCAGGATATAAAACAATTACTACAATTTCTGGAACTGCAAATTACTAAGATCTTTGGTAAAGATAAACtggaaatgtataaaaagttatatttcaaCGGCAGGAACGCTATCGAAAATATGGCTCTGGACGAAGATCTCAATCTGTATATAGTATGGGCTCACGCCAAGCAAATGACAACATTACCGGACACAAATGTAGCGTCGAGTTCCAATACATTGACCCCATGTTACCAAGAACAAGAGCAGGGACCAAGAATGACTCAAAACACTGAGGTTATTCTAGACAATAATGAAGCCATTAGTTCTTTAGCAACAACCACATCAATTCGAACCCCAGAATTTACTCAAAGCACTGAAATGATTTCAAATGTTGATTTTACCGATCGAAATATTATGGGTCCAAACACAACTGTAACGTTGAGTTCCACCGCATCAAACTCTGTTACTAAAGAACGAGGACTAATTCAAGATGCTGAAAAACATGATATGGCTGCAGCgacaaatattaaatcaaaacaAGACGTACAACCGAGTAGCATTATATATAAAGCGAATGAGTTGATTCAAACTGCCAAAGAAGTTCCATATCACTACAACGCTACTGCGATTGATCATAATATTATGGTCATATCACCGGACACTGACGAAGTGTTGAATTGCACTGCATTGAGTTCGTGCATTCAAGAACAAGAACCAACTGAAAATACTAACCACGCTTTCTTGAATGGCACGAATTCGGGTACTAATCCTGCATTAAACCAAAGTACTTTTGAAGAAAGTTTGGCGAATTCGATTGAAGTTCAACCGAATAAACATGGTTGCACTCCAGAAAAAAACACATTGAGCAAAGTATTGGGTGTCACAGTACCATCACCTTTCAAGAATTGCCTTTTTTGGCCTGAAATGGTACATACTAAAAAGACTAGAAGATATAAGGAAAAAATACCATCAGCAGTGACCAGTAAGGCTTGGCAACAATACCATGTGAAAAAAGATGCAGAAAAAAGAAGGATTATAgaagaaaaagaattaaaagcAAAACTGCGGCTAGAGAAAAAGGAATTTAAAGAAAAGATGGCAAAAGTAAAGAAAGATAAAGTTAAGATCAAAAAGAAGAAAGTTAGTGAGATTTCATCATCTGAAGATACGGATATGGAAGTAAACTACATTGAAAGCGGTGAAAGCGAATTAAATGAACAAAGTGACCCAAATATGTGCGAAGAAGAAATAATAGATCAAATGCTGAAAAGAAAACAAACTAAAGTAGCAAAggaaaaaagaaatacaaagatcGAAGATACTGTTTCTGATATAAATTCTGATATAGATACTCCAACATGCAgctacaaacataaaaaaaagaaagacctTACAAAGGGATGTTTTGTCATAGTGAAATATGAAGGTGAATATTTCCCAGGAAAAATTGAGAACGAAGATAAAGAACAGTACGAAATAAGTACCATGGTATTGTCTACTGGCAATACTTTTAGATGGCCAGAAAGACCGGATAAAATCTGGTACAAAATGAGCGAGGTAATTGAAAAGATATGTCCTCCTGTTAAACAAAATAACAGAGGATTTTATAAAGTTGCAGAGATGGAAAAGTTTTTACCTGacatatacaatatgtaa
- Protein Sequence
- MAPIKNYTPKQMGDAIEAVQGGESVAAAAKRFGVPRITLYNKISGKSPMQCSMGPTTVLTSTEEDLLVKWLSAMAERRFPISKETLLDSVQRIITVQNKSNPFTQNRPGRKWFASFLRRHPIIAQRTAENLTAARENVTEEQIVSWFREIHEYLTSVDLHHVLEDPSRVFNTDESAFFLSPKPGQVLVKRGEKHVYAASGDEKENLTVLVTANAAGKLAPPMIVFAYERIPANIANGVPEDWGIGKSESGWMCSETFYEYITSIFNPWLVKEQIQKPILFFVDGHKSHLTLQLSQFCSENGIEVIALYPNSTHILQPMDISVFRPLKVFFRKEVIAWKMENMGNKLKKENFAPVFKKALDRITEDCVKNGFRGGGLYPFGPEYIDMTKFGNKKSTISEPNEGKDQDIKQLLQFLELQITKIFGKDKLEMYKKLYFNGRNAIENMALDEDLNLYIVWAHAKQMTTLPDTNVASSSNTLTPCYQEQEQGPRMTQNTEVILDNNEAISSLATTTSIRTPEFTQSTEMISNVDFTDRNIMGPNTTVTLSSTASNSVTKERGLIQDAEKHDMAAATNIKSKQDVQPSSIIYKANELIQTAKEVPYHYNATAIDHNIMVISPDTDEVLNCTALSSCIQEQEPTENTNHAFLNGTNSGTNPALNQSTFEESLANSIEVQPNKHGCTPEKNTLSKVLGVTVPSPFKNCLFWPEMVHTKKTRRYKEKIPSAVTSKAWQQYHVKKDAEKRRIIEEKELKAKLRLEKKEFKEKMAKVKKDKVKIKKKKVSEISSSEDTDMEVNYIESGESELNEQSDPNMCEEEIIDQMLKRKQTKVAKEKRNTKIEDTVSDINSDIDTPTCSYKHKKKKDLTKGCFVIVKYEGEYFPGKIENEDKEQYEISTMVLSTGNTFRWPERPDKIWYKMSEVIEKICPPVKQNNRGFYKVAEMEKFLPDIYNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00404769;
- 90% Identity
- iTF_00404769;
- 80% Identity
- iTF_00404769;