Cmes024048.1
Basic Information
- Insect
- Cybosia mesomella
- Gene Symbol
- -
- Assembly
- GCA_946251875.1
- Location
- CAMIUH010000733.1:51886-71250[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.1e-05 0.021 16.5 0.0 3 30 548 575 546 576 0.93 2 2 0.0093 2.7 9.7 0.1 2 24 999 1021 998 1022 0.91
Sequence Information
- Coding Sequence
- ATGCATGCCTGGGTCGACGCTTGGAGGGTTGAAGAGGGCCTCATAAGTTCGGACCAAAACGGCATCTGGTTCAGCCTTAGCCTGGAGAGGGCCAAGGGAACCAAAATCGAACGCACAACCCGCATCTTCAACACCAGGAAGGCCGACTGGGATGCTTTCAAAGCCAGCGTCACTCGGTCGCTCTCGGATATCGCGATAGGCGAAACTAGGGACAACCAAGAGTTAGATACTATAGTCGAAGCATATACGAGAGCGATCGATAAAGCGTGTGGGGAGAGCATCCCAGCCAAAAAACTGGGCGGGCTGATCACGATGCCGTGGTGGTCCGAAAGACTCGCGGAGCTTCAGAGGTCTGTCAAAACCAAAAAGCGTCGAATCAGGAATGCAGCGCCGATCCGAAGGGAATTGGTGGTGGCACGGTACCTAGAGCAAAAGGAGATATATGAATCAGAGGTAAAAAAGGCACAGGTCGAGGGTTGGAAGGAGTTCTGCGGAAAGCAGGACAGGGAGGGTCTCTGGGAAGGGATTTATAGGATGATCAGCAGAGCCACAGTAAGGGAGGAGGACACTCCGTTTACCGCCAATGGAACTTACCTGGACGCAAAGGGCTCGGCCGAGTTGCTCGCCCGAACCTTTTACCCGGAAGATCGGGTGGAGGAGGATAATGGAGGGCATCGAGAACTACGTGAAAAATCAAAAGAGGTTGACTATGAAAGGGGTCATCATAGCGATGACCCACCCTTTACGGTGAGCGAACTTCTCGATGCCCTTCAGAAGTTCAACCCTAAAAAAGCTCCGGGAGCGGATGGCTTCACCGCAGATATCTGCATCCACGCCATTAGGGCCGACCCCTTACTCTTCCTGAAGCTGCTGAATCGGTGCCTCCACCACGGCTACTTTCATAAGATATGGAAGGAAACCGTGGTGGTTGCACTGAGgaagccaggaaaggactcgtacaccgtccccaagTCGTATAGACCTATTGGTCTATTGCCCGTCTTGGGGAAGGTGTACGAGAGAATGCTGGTTGCTCGTCTTAAGTTTTACCTTTTGCCGAGGATTagtcctcgccagtacggctttatgCCCCAGAAAAGCACCGAGGACGCCCTCTATGATCTCATGGGGCACATAAGGGCTCGTCTCGATGAAAAGAGAATAGTCCTTATGGTGTCcctggatatagagggcgccttcgatagcACCTGGTGGCCTGCAATTAAAGTACGGCTGGCGGAGGAGAGGTGCCCGGCAAACTTGAGGCGAGTAATCAGTAGTTACCTTAGCGACAGGGAGaaaggcgatcggcatctaccacAAGCTAGCGCGGATGGCTCGTATCAACTGGGGGCTtcaccccgaggtgatccgaACCATTTACAACGCGGCTGTGGAGCCGACGGTGCTGAATGCGGCCAGCAGTTGGTGCGCGGCGGTGGACAAGCTTGGTGTCAGAAAACAGCTGAACgtggtgcagcgcggattcgcTCAAAAATTAATTCCAGATATTCTTTAAACTTTTTAGAAGAGATTGCTAGCGGTGCTGGTGATTTTCGCATTCGTTTAGTGCCTTTCCTGTATTCAGGAAGTCTCAgtAGATGTCCATGCTGcgtaaaaaaaggaaaactaTATGACCAGGGTACTCTAGAAAAAGCAGTGCGTTTAGTAAAAGAAAAACAGATATCCATATCCCAAGCTAGCGCTCAATTTAATATACCGAAAGGTTTTTATATTGCATTGCATAACAAAGTACATGGCAAAACGCCTATGCTAAGTAGAAAAGGGCCAGTAAAATTACTATCCGACAATGAGGAAAACAAACTGGCGACTTGGATTTTAAATTTGGCCAAAGTTGGCTATCCTGTCAATACTAATGACGTTAGGGACACGGCTGCTCAGATTTTTGATATTAAAGGTATAGGGCTAAAGCCGGGCAAAAAATGGATGCAACTATTTTTACAAAGACACCCTAATATCACCAAAAGACACGCAGAGATTATTTCTAAAGCAAGGGCTTCAGTTACAGAGCCAATGATCAGAAAATGGTTCCAAGAGTTACGTCAGTATTTGGAAGAAGAAAATGCAATAGACATACTAAATAACCCTGAAAGAATTTTCAATTTAGATGAGACAGGCGTACAATTGTGTCCGAAAACCGGCGTTGTTTTGGCACCTAAAAACTATCGTGCGATGTATGATGTTGCTTCTGGACAAGAAAAAGAAATGTATCGTGGGAAGCATTACCTCCAGATCGAGGGAGTAGCCATGGGTAGCCCAGTGGCACCGGTCATGGCTAATATCTGGATGGAACATTTCGAAGCCAGCTTAGATCTGCAACCATGGGCAGTGAAGTTCTGGAAGAGATATGTGGACGATGTTTTCTGCATTCTTAAAGGCGGCAAGCAGGAGGTCGAGCAGTTACTGGGACATCTGAATTCAATTCATCCTAAAATCAAGTTCACGTATGAATTGGAATCGGACAGAAGCTTACCTTTCCTGGATGTGAGGGTGACATGTCGGACTGATGGATCCCTAACGCACACAGTCTACAGGAAACCAACGCACACCGACAGAATGGAAAATTCTAACTCTGTCATGCCTGCAAATAACACCGAAGAAATATCAAAGCTTCAAGAAGGAGAATTGGAACTGACTCTCGGGACACATACTTTGATTGAAGGAATTATTGATATCGAAAACATCCCAATTGAAATAGAAACTGTGACTTTGCTGATGCAAAACATTTTAGGAGATACAAACGAGAAATGCATAACATTAGACTTATGTGTACCGGTTGCTGATGACGATGGCGTCCCAGTGCATATGAATGAAGTATCTTTATCTATGGATTCTCAAaggaattttgatgaaattgagCCTCCAACTGGGTCTTCTATACCTGAGGAAAATGTGGACAATGATGAAGAATATTACAGAGAGataATGGCTCCGCGGAAACCACATTCACAAAGTAAACGACAAACATGGTCCAAGGAGTCTATGAAAAAAGCTATAGAAGATGTGAGAACCAAGAAAATGGGTTCCCTAAAAGCATCTAAGTTATAA
- Protein Sequence
- MHAWVDAWRVEEGLISSDQNGIWFSLSLERAKGTKIERTTRIFNTRKADWDAFKASVTRSLSDIAIGETRDNQELDTIVEAYTRAIDKACGESIPAKKLGGLITMPWWSERLAELQRSVKTKKRRIRNAAPIRRELVVARYLEQKEIYESEVKKAQVEGWKEFCGKQDREGLWEGIYRMISRATVREEDTPFTANGTYLDAKGSAELLARTFYPEDRVEEDNGGHRELREKSKEVDYERGHHSDDPPFTVSELLDALQKFNPKKAPGADGFTADICIHAIRADPLLFLKLLNRCLHHGYFHKIWKETVVVALRKPGKDSYTVPKSYRPIGLLPVLGKVYERMLVARLKFYLLPRISPRQYGFMPQKSTEDALYDLMGHIRARLDEKRIVLMVSLDIEGAFDSTWWPAIKVRLAEERCPANLRRVISSYLSDREKGDRHLPQASADGSYQLGASPRGDPNHLQRGCGADGAECGQQLVRGGGQAWCQKTAERGAARIRSKINSRYSLNFLEEIASGAGDFRIRLVPFLYSGSLSRCPCCVKKGKLYDQGTLEKAVRLVKEKQISISQASAQFNIPKGFYIALHNKVHGKTPMLSRKGPVKLLSDNEENKLATWILNLAKVGYPVNTNDVRDTAAQIFDIKGIGLKPGKKWMQLFLQRHPNITKRHAEIISKARASVTEPMIRKWFQELRQYLEEENAIDILNNPERIFNLDETGVQLCPKTGVVLAPKNYRAMYDVASGQEKEMYRGKHYLQIEGVAMGSPVAPVMANIWMEHFEASLDLQPWAVKFWKRYVDDVFCILKGGKQEVEQLLGHLNSIHPKIKFTYELESDRSLPFLDVRVTCRTDGSLTHTVYRKPTHTDRMENSNSVMPANNTEEISKLQEGELELTLGTHTLIEGIIDIENIPIEIETVTLLMQNILGDTNEKCITLDLCVPVADDDGVPVHMNEVSLSMDSQRNFDEIEPPTGSSIPEENVDNDEEYYREIMAPRKPHSQSKRQTWSKESMKKAIEDVRTKKMGSLKASKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -