Cmes040567.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cybosia mesomella
Gene Symbol
-
Assembly
GCA_946251875.1
Location
CAMIUH010001437.1:76761-82184[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.8e-10 5.1e-08 34.4 0.0 1 41 115 155 115 159 0.94

Sequence Information

Coding Sequence
ATGGATGTAGTGTGGTCCAACAGTCAGATTTCGATGCTCATAGAGCTTTACCAACAGCACAATATAATTTGGGATGCCTCACATAAAGATCataagaataaattaaaaaaacatgacGCTTGGGCCGACATTGCTGCAAAATTGAATATGTCGCAAAAAGAAGTGGAAACAAAGATGCATATTCTACGATCACAATTTAGTCGTGAAAAGAAAAAGCTTAAAGCATCAAAAAGGACTGGAAGCAGTGCCGAGGAAGTGATTAAAAGCAAATGGCAGTGGTATGAACCGCTGCAATTTGTATTGTGTGGTGCAACGACGTctggaacatcggatacaaTGGGAACAGAAGAAGATTTACAAAGGGCAATTGATGCcataaatattgataaaatcGGTGTTAGACAAGCCTGTCGTGATTATGGTGTTCCTCGCACTACTGTTCAAGACAGATTATCAGGACGAGTTGTTCTTGATCAAAGAAAACCGAGAAAAGTAGGTCCAGATCCAGTTTTAGGTTTTGAAGGTGAACAGAAAATTGTAGACTGGATAATAGATATGGCTAAATGTGGCATACCAATAACGAAAACACAATTGATGGAGACAGTGAAAAACATTTGCAAAGATACGGGCAAAGATGCAATTTCTTTTACGGGTCAAAAACCTGCGCAGTCATGGTTCAGAGGTTTTTGTAAAAGGCACCCCGAAATTAGTATACGTGAGCCCGAAGGGATCAACAAAGCAAGAGAATCTGTTAAGGAAGGGACGATCAGGAAATGGTTTGAAGATCTTGAAGTGTTTTTATCAGAGAAAAATTTGTTGGATATGATGAAGGATCCAGAACGTGTTTTTAATGCTGATGAAACCGGAGTGTCTCTATGTCCCAAAACTGGAAAGGTACTTGCACCAAAAGGATATAAAAACGTTTACACTGTTACAAAGGGCAACGAGAAAGAAACTATAACTGTACTTATCACAATAAACGCTGCTGGAAAAATATGTCCTCCTCTGGTGGTATTCCCTTACATACGACCTCCTAAAGCGATTGTGGTCAAtatgccagaaaagtgggtggTAGGAAAAACAGAATCCGGTTGGATGCGCTCTGAtgtattttatgaatatatggctaatgattttaataattgGATACTcgataacaatataaaaaaacccGTAATTTTATTCGTGGATGGGCACAAGTCGCATATGACAATGCAACTAAGTAAATTTTGCGAGGATAATGATATAGTTCTATATGCTTTACCTCCTAATACTATCCACATAACACAACCAGCAGACGTTAGTGTGTTCCGTCCGCTGAAGCAAGCATGGAAAAAAACTGTTTCAAATTGGCATTCCAGACCGGAAAATACGAACAAAACTGTGACCAAAACCAACTTCTGCAAAGTATTTCAAGAAACGCTTTACAATGATATGACTCAAAGCATAAGGAATGGTTTCAGAAAGTGTGGGTTGTATCCGTTTGATGTAGAAGCAATAGACTATTCTAAATGTGTGAAAGATTTccaagaaaaaaagaagaagagacCATCTTCATCTAGCGAGTTAACAGAAAGAGATTTTGAAAGTACTTTAAAAGTAGTAaactttataaaagaaaatctgcTCAAGAGTAGTGTAGACTTTAATATTGTTGTCAAAGAAATCGAAAAAGCAAGAACTGCGagcaaagaaaaaagaagAATAGACACTCCTCAAGAAGAACCTGAGAATGCATTGAATATAATAACGAGGGCTGATGTCCACTGTGAAGAATATTTGAAAGAGCATGTTGAAACTCAAGAAACGATTCTAAAGTCATGTACGTCACCAGCGATTAAGAGTGCTGTTGTTAATGACGATACGATAATCGAGTCTCGAGATGTTATAATAAACACAGTCTCAAGTAATGCTGATCCTTTCGATAAACATCTTAAATTTTTTGAAACACCCTCCGAAGTAACAGCAAAAAAGAGAAATATTAATAGGCTACCAAGTGCAATATCAgcaaagaaatggagagaatTCTATGAGCTTAAGGATATAGCAAAGCGTAACATTGAAGAAGAGAAACAGAGAAAAAAGGCGGAGCGAGAGAGAAAAAAGAATGAGACAGCTGAACTTAAACAAGCTAAAAagaaaacacgaaaaaataatGACCAAATTAAACTTACTATGATTGACACTGATAGTATAGATGGTGACCATATGCCGACAAAAGCGAAACCTCCAAAGAAAGAAGAATTTAGAGCAATGAGATCAGAAAACACAAACACAGTAAAAGATGATCAAATTTTTAGTGAAAGGATGACGGATAtaagaagaaaaatatttgaCAACTCTGAAAGTGATGaggataatattaatattataaaaacgtTGATGAATAAACCAAAGGGAGGCCATAATATAAAAGTTGGAAGCTCAGATAAGACGTCGGAATCTAGATTTGAAGAAACAACAGGTAACCTAAGCGAAGAAGAAAGATCAGGTGAAGATGAAgactttaatatattttaa
Protein Sequence
MDVVWSNSQISMLIELYQQHNIIWDASHKDHKNKLKKHDAWADIAAKLNMSQKEVETKMHILRSQFSREKKKLKASKRTGSSAEEVIKSKWQWYEPLQFVLCGATTSGTSDTMGTEEDLQRAIDAINIDKIGVRQACRDYGVPRTTVQDRLSGRVVLDQRKPRKVGPDPVLGFEGEQKIVDWIIDMAKCGIPITKTQLMETVKNICKDTGKDAISFTGQKPAQSWFRGFCKRHPEISIREPEGINKARESVKEGTIRKWFEDLEVFLSEKNLLDMMKDPERVFNADETGVSLCPKTGKVLAPKGYKNVYTVTKGNEKETITVLITINAAGKICPPLVVFPYIRPPKAIVVNMPEKWVVGKTESGWMRSDVFYEYMANDFNNWILDNNIKKPVILFVDGHKSHMTMQLSKFCEDNDIVLYALPPNTIHITQPADVSVFRPLKQAWKKTVSNWHSRPENTNKTVTKTNFCKVFQETLYNDMTQSIRNGFRKCGLYPFDVEAIDYSKCVKDFQEKKKKRPSSSSELTERDFESTLKVVNFIKENLLKSSVDFNIVVKEIEKARTASKEKRRIDTPQEEPENALNIITRADVHCEEYLKEHVETQETILKSCTSPAIKSAVVNDDTIIESRDVIINTVSSNADPFDKHLKFFETPSEVTAKKRNINRLPSAISAKKWREFYELKDIAKRNIEEEKQRKKAERERKKNETAELKQAKKKTRKNNDQIKLTMIDTDSIDGDHMPTKAKPPKKEEFRAMRSENTNTVKDDQIFSERMTDIRRKIFDNSESDEDNINIIKTLMNKPKGGHNIKVGSSDKTSESRFEETTGNLSEEERSGEDEDFNIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-