Cmes001341.1
Basic Information
- Insect
- Cybosia mesomella
- Gene Symbol
- -
- Assembly
- GCA_946251875.1
- Location
- CAMIUH010000039.1:107252-108908[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-14 3.8e-12 47.7 0.0 5 38 1 34 1 40 0.93 2 2 5.2e-09 1.5e-06 29.7 0.0 4 38 119 153 117 159 0.91
Sequence Information
- Coding Sequence
- ATGGCAAAAGCTATAGAAGCTgtgagagaaaaaaaaatggggctAAACCAGGCTGCAAAACACTATTCTGTACCCAAAACTACACTGCAAAGGCTAGTAAAAAGCGAACTGCCACCTAAAGAagtcgttaaaaaaaaaataggaagaaAAACTATCTTACCACCTGCAATAGAAGAGCAGTTGGTTGAACAGTTACTTTTAATGGAAAGTAAACATGGTTTTACTCGAAGCGACGTAAAGCGTCTTGCTTATCAACTGGCAATTGAACATGGAATTGACTATCCGTTCGAAATCATGGCTTGTACTAATTCATCGCCGAAGTCCACCCCTAAGAGGAAGGCCTGGGATCAATATGCTATGGCAGAAGCTATAGCAGCTGTGAGAGGAAAAGAAATGGGACTATTCAAGGCTGCAAAACAATATTCTGTACCCGGAACTATACTGCATAGGTTAGTAAAAAGCGAATTACCACCTAAAGAAgttgttacaaaaaaattagGAAGAAAGACTTTCTTGCCACCTGCAATAGAAGAGCAGTTGGTTGAACAATTACTTTTCATGGAAAATAAACACGGTTTCACTCGAAACCATCTAAAGCGTCTTGCTTATCAACTAGCAACTGAACATAAAATTGACCATCCGTTCAAGAATAAAGATGTTGGTTGA
- Protein Sequence
- MAKAIEAVREKKMGLNQAAKHYSVPKTTLQRLVKSELPPKEVVKKKIGRKTILPPAIEEQLVEQLLLMESKHGFTRSDVKRLAYQLAIEHGIDYPFEIMACTNSSPKSTPKRKAWDQYAMAEAIAAVRGKEMGLFKAAKQYSVPGTILHRLVKSELPPKEVVTKKLGRKTFLPPAIEEQLVEQLLFMENKHGFTRNHLKRLAYQLATEHKIDHPFKNKDVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -