Basic Information

Transcription Factor Domain

TF Family: zf-GATA
Domain: zf-GATA domain
PFAM: PF00320
TF Group: Zinc-Coordinating Group
Description: This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0048 13 5.9 0.1 2 14 3 15 3 16 0.93

2 18 0.31 8.7e+02 0.1 0.0 4 14 16 26 15 34 0.90

3 18 0.047 1.3e+02 2.7 0.1 4 14 49 59 47 60 0.93

4 18 0.22 6.2e+02 0.6 0.0 3 14 59 70 58 78 0.89

5 18 0.023 64 3.7 0.0 2 14 80 92 80 101 0.90

6 18 0.0045 12 6.0 0.1 2 14 102 114 102 119 0.94

7 18 0.17 4.8e+02 0.9 0.1 4 14 115 125 113 134 0.71

8 18 0.048 1.3e+02 2.7 0.1 2 14 124 136 124 137 0.92

9 18 0.023 64 3.7 0.0 2 14 135 147 135 156 0.90

10 18 0.11 3.2e+02 1.5 0.1 2 14 146 158 146 159 0.91

11 18 0.12 3.4e+02 1.4 0.0 3 14 158 169 157 178 0.85

12 18 0.085 2.3e+02 1.9 0.0 2 14 168 180 168 189 0.87

13 18 0.11 3.1e+02 1.5 0.0 2 14 179 191 179 192 0.92

14 18 0.23 6.4e+02 0.5 0.0 3 14 202 213 201 219 0.88

15 18 0.062 1.7e+02 2.3 0.0 2 14 212 224 212 225 0.93

16 18 0.19 5.1e+02 0.8 0.0 3 14 224 235 223 238 0.90

17 18 0.21 5.7e+02 0.7 0.0 4 14 247 257 245 265 0.85

18 18 0.088 2.4e+02 1.9 0.0 2 14 256 268 256 272 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0048	13	5.9	0.1	2	14	3	15	3	16	0.93
2	18	0.31	8.7e+02	0.1	0.0	4	14	16	26	15	34	0.90
3	18	0.047	1.3e+02	2.7	0.1	4	14	49	59	47	60	0.93
4	18	0.22	6.2e+02	0.6	0.0	3	14	59	70	58	78	0.89
5	18	0.023	64	3.7	0.0	2	14	80	92	80	101	0.90
6	18	0.0045	12	6.0	0.1	2	14	102	114	102	119	0.94
7	18	0.17	4.8e+02	0.9	0.1	4	14	115	125	113	134	0.71
8	18	0.048	1.3e+02	2.7	0.1	2	14	124	136	124	137	0.92
9	18	0.023	64	3.7	0.0	2	14	135	147	135	156	0.90
10	18	0.11	3.2e+02	1.5	0.1	2	14	146	158	146	159	0.91
11	18	0.12	3.4e+02	1.4	0.0	3	14	158	169	157	178	0.85
12	18	0.085	2.3e+02	1.9	0.0	2	14	168	180	168	189	0.87
13	18	0.11	3.1e+02	1.5	0.0	2	14	179	191	179	192	0.92
14	18	0.23	6.4e+02	0.5	0.0	3	14	202	213	201	219	0.88
15	18	0.062	1.7e+02	2.3	0.0	2	14	212	224	212	225	0.93
16	18	0.19	5.1e+02	0.8	0.0	3	14	224	235	223	238	0.90
17	18	0.21	5.7e+02	0.7	0.0	4	14	247	257	245	265	0.85
18	18	0.088	2.4e+02	1.9	0.0	2	14	256	268	256	272	0.93

Coding Sequence: ATGCTACGGCACTGCTACGGCACTACTACGGCACTGCTACGGCGATGCTTCGGTACTGCTACGGCACTACTACGGCACTGCTACGGCGATGCTTCGGTACTGCTACGGCACTACTACGGCACTGCTACGGCGATGCTTCGGTACTGCTACGGCACTACTACGGCACTGCTACGGCGATGCTTCGGTACTGCTACGGCACTACTACGGCACTGCTACGGCGATGCTTCGGTACTGCTACGGCACTGCTACGGCACTGCTACGGCACTGCTACGGCACTGCTACGGCGATGCTACGGCACTGCTACGGCACTGCTACGGCACTACTACGGCACTGCTACGGCGATGCTTCGGTACTGCTACGGCACTGCTACGGCACTGCTACGGCACTGCTACGGCGATGCTACGGCACTGCTACGGCACTGCTACGGCACTGCTACGGCACTGCTACGGCGATGCTACGGCACTGCTACGGCACTGCTACGGCACTGTTACGGCGATGCTACGGCACTGCTACGGCGATGCTACGGCACTGCTACGGCACTGTTACGGCGATGCTACGGCACTGCTACGACACTTCTACGGCACTGCTACGGAACTGCTACGGCGATGCTTCGGTACTGCTACGGCACTGCTACGGCACTGCTACGGCGATGCTACGGCACTGCTACGGCGATGCTACGGCACTGCTACGGCACTGCTACGGCACTACTACGGCACTGCTACGGCGATGCTTCGGTACTGCTACGGCACTGCTACGGCACTGCTACGGCACTGTTACGGCAATGCTACGGCACTGCTACGGCGATGCTACGGCACTGCTACGGCACAGCTATGA
Protein Sequence: MLRHCYGTTTALLRRCFGTATALLRHCYGDASVLLRHYYGTATAMLRYCYGTTTALLRRCFGTATALLRHCYGDASVLLRHCYGTATALLRHCYGDATALLRHCYGTTTALLRRCFGTATALLRHCYGTATAMLRHCYGTATALLRHCYGDATALLRHCYGTVTAMLRHCYGDATALLRHCYGDATALLRHFYGTATELLRRCFGTATALLRHCYGDATALLRRCYGTATALLRHYYGTATAMLRYCYGTATALLRHCYGNATALLRRCYGTATAQL

Sequence clustering based on sequence similarity using MMseqs2