Csei021481.1
Basic Information
- Insect
- Cyaniris semiargus
- Gene Symbol
- -
- Assembly
- GCA_905187585.1
- Location
- LR994568.1:5857066-5869492[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0038 0.29 12.1 4.4 1 23 242 264 242 264 0.98 2 13 0.099 7.5 7.7 3.7 1 23 272 295 272 295 0.92 3 13 0.081 6.1 8.0 0.8 1 23 299 322 299 322 0.93 4 13 0.00026 0.02 15.8 2.5 1 23 398 420 398 420 0.99 5 13 1.2 91 4.3 4.6 1 23 428 451 428 451 0.96 6 13 0.23 17 6.5 0.7 1 23 455 477 455 477 0.96 7 13 6.8e-05 0.0052 17.6 1.9 1 23 482 505 482 505 0.97 8 13 0.021 1.6 9.8 1.5 1 23 509 532 509 532 0.94 9 13 0.4 30 5.8 0.1 3 20 550 567 548 569 0.93 10 13 4.6 3.5e+02 2.4 0.8 1 10 647 656 647 662 0.84 11 13 4.6 3.5e+02 2.4 0.8 1 10 685 694 685 700 0.84 12 13 3 2.2e+02 3.0 0.3 1 11 723 733 723 736 0.86 13 13 0.00068 0.052 14.5 3.9 1 23 741 764 741 764 0.97
Sequence Information
- Coding Sequence
- ATGCACGATATACAGGCTTGTATAGCTTGTCTTAGAACCGATGTTAAAATCTTTCACATGAGCTCAAATCATATTCGAGAAGACTATAACTTGGTTTCTGGATTAAAGATTTGTAGTGGGGAAGGACTACCAGAATATGTGTGTGTGGAATGCTTGGCACTTGTTAAGGGCATGAAGAGGTTCAGAGACAAATGCCATAGATCTCATTTCCTTCTACACGAAGTACTCAAAAAGAATAAACAGATTACTTTGCAAGTACTAAATGAAATTAACCTACAAGCCATAGATATAACCCCAAAGCTATCTTACCTCAATAATAGCAGTACAAATAAGTACGAAAAAATAAAATTTAAGTGGGAGAAAGAGAACCGATCCTATGTGCAGCCTATTCAAGCTAATGTGTTATTGCATAGTACAGTTGACAATGAAATAAATACATACTTAGATGTAGAAGTCCCAGAATGTAAATTGCCACCAGTTTTTAACATAGAAGATGAAAACATTAACAATGAAATTAATGTTTCCGTAGAAACCGATCCAAAAAATAATGAAGATTATGATTATGTTGATAATGAAATAGAAGATGATATCGAGATAGAAAAAGAGGAGAATGACGTAGATGGATCTAATTTAGATGTAGAATATGCTGTTTTGGTTCCTATGTCTAAAAAAGAAGCTGCGGCCGTTATAGATATTTTTAAAACATACGGACAGACAGGAAAACATGAGTGCGACATATGTGGGTTAAAGTTTCACAATAAGAATAGACTGGACCAACATAGACGGATGCATGATACGCATATAAATGGTAATTTTAGCTGTGATCTGTGCCATTATTATTATAAGACGAAATTTTTACTGGACACCCACATCACTGACAAACATATGTACAAATATATTTGTAAAAAATGCCCAGAAGTTACTTATAATAGAAAAACAGCCAAGCAACATTACATACTCAGTCACATGGATAAAGCAGACAAAACGTTCAAGGACTGGTACGACACGAGACCCTCGTGGTTAAAGAAGAGAAGTCTCAACGGCAGAAGACCAAAGAAGACAAATAAACATAAGAAGAATGTCATCACCCGTGAAGGCTTCGAGTTTTTAAAATATTCTCCGATTTCACACAACGAGCAATACAGTCTTGTGTTGCAGAGAAAGAATTCGAAAAACTATGTAGAATCTATGTATAAATGTGAACTGTGTTACAAAGGTTTTCGTGAGGAGAAGACTTATGAGAAACACATGCAGAAACATGATCCGAGTATATCGGGCAAGTACCAGTGTGACTCGTGCAAGATATACTGCGCTCACCCCCGCAAGATGTACAAGCACATGATTCAGACACATTTATACAGGTTCACATGCACGCTCTGCACTTTTGTTACGACGAATCGGCCCCAAGCAAAACTGCACTATCTCTGGCATAAGGACGTCACATACGCCTGTCCTCACTGCGACAAAGTTTTTAAGAAAATGTCCACCCAACTCACCCACATCCGTATAAAACATCCATCGCTTTTCATCTGTAATCTGTGCGGACACAGTTTCGTCAGCGAAGCCGGCCTGATATGCCACAAGAGGATTACGCATCAGGACGAGGCGAAAGAGGAGGACGACATGAAGACTGATGTGGCTTTATTCTGCGCGGTGTGCAATCTGCAGTTCAAAGACGAGGTCGCGTACACCACGCACCTGGGCAGCTCCGGCAACCACGCCGAGAGCAACCTTTCCGTATCGAAGACCATGGCGAGTAAGAACAAAAAGGTCCGCGCGGCGAGAAACCGCCGCACGCGCCGACAATTCCCCGAAGTGCTTAACAACGGCGTCGTCACAGAGACCAATTGCGAGATTTGTGACAAGCTGCTGCTGAGCGACGTGCAGGCTCGCCGGCACTACGAGACCGATCACCCCGGCGCCGAGTTCCGGAAGCGGTTCATGTGCGACATCTGCGGACACACCACACGGTGCGACAAGCTCCTGCTGAGCGACGTGCAGTCTCGCCGGCACTACGAGACCGACCACCCCGGCGCCGAGTTCCGGAAGCGGTTCATGTGCGACATCTGCGGACACACCACACGGTGCGACAAGCTCCTGCTGAGCGACGTGCAGTCTCGCCGGCACTACGAGACCGACCACCCCGGCGCCGAGTTCCGGAAGCGGTTCATGTGCGACATCTGCGGACACACCACACGGGTCCACACAGGCGAGAAACCGCACGAGTGCCCGCACTGCTTCCGTCGATTCTCGCAACGGACCGCCATGAAATTACACGTCCAGACCGTACATCTAAAAATACCGTACGCACCCTGGAATAAGAACAACAGAAAACGCCGACAGAAGGACGAAACGGAGACGGCGAGTACGATTCTTACCACCATGATGCCGGCCAAATTGCCGACACTCACCAAAATGCCGATTGTCACAGAGACGCATGATTACCTCAACGCGTATATCAATTATAATGAGTGA
- Protein Sequence
- MHDIQACIACLRTDVKIFHMSSNHIREDYNLVSGLKICSGEGLPEYVCVECLALVKGMKRFRDKCHRSHFLLHEVLKKNKQITLQVLNEINLQAIDITPKLSYLNNSSTNKYEKIKFKWEKENRSYVQPIQANVLLHSTVDNEINTYLDVEVPECKLPPVFNIEDENINNEINVSVETDPKNNEDYDYVDNEIEDDIEIEKEENDVDGSNLDVEYAVLVPMSKKEAAAVIDIFKTYGQTGKHECDICGLKFHNKNRLDQHRRMHDTHINGNFSCDLCHYYYKTKFLLDTHITDKHMYKYICKKCPEVTYNRKTAKQHYILSHMDKADKTFKDWYDTRPSWLKKRSLNGRRPKKTNKHKKNVITREGFEFLKYSPISHNEQYSLVLQRKNSKNYVESMYKCELCYKGFREEKTYEKHMQKHDPSISGKYQCDSCKIYCAHPRKMYKHMIQTHLYRFTCTLCTFVTTNRPQAKLHYLWHKDVTYACPHCDKVFKKMSTQLTHIRIKHPSLFICNLCGHSFVSEAGLICHKRITHQDEAKEEDDMKTDVALFCAVCNLQFKDEVAYTTHLGSSGNHAESNLSVSKTMASKNKKVRAARNRRTRRQFPEVLNNGVVTETNCEICDKLLLSDVQARRHYETDHPGAEFRKRFMCDICGHTTRCDKLLLSDVQSRRHYETDHPGAEFRKRFMCDICGHTTRCDKLLLSDVQSRRHYETDHPGAEFRKRFMCDICGHTTRVHTGEKPHECPHCFRRFSQRTAMKLHVQTVHLKIPYAPWNKNNRKRRQKDETETASTILTTMMPAKLPTLTKMPIVTETHDYLNAYINYNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00406299;
- 90% Identity
- iTF_00934209;
- 80% Identity
- -