Basic Information

Insect: Cyaniris semiargus
Gene Symbol: RREB1
Assembly: GCA_905187585.1
Location: LR994546.1:22588542-22602177[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.062 4.7 8.3 0.9 2 23 93 115 92 115 0.96

2 12 0.14 11 7.2 0.6 2 22 156 176 155 176 0.94

3 12 0.02 1.5 9.9 0.1 1 23 296 318 296 318 0.97

4 12 0.00026 0.019 15.8 0.2 1 23 327 349 327 349 0.99

5 12 0.00067 0.051 14.5 2.0 1 23 355 378 355 378 0.97

6 12 0.0027 0.2 12.6 1.6 1 23 731 754 731 754 0.96

7 12 0.00022 0.017 16.0 1.3 2 23 944 965 943 965 0.97

8 12 0.023 1.7 9.7 5.3 1 23 971 994 971 994 0.97

9 12 0.2 15 6.7 1.4 1 23 1024 1048 1024 1048 0.90

10 12 0.073 5.6 8.1 0.3 1 23 1071 1094 1071 1094 0.95

11 12 0.0017 0.13 13.3 0.2 2 23 1134 1155 1133 1155 0.96

12 12 0.026 1.9 9.5 5.3 1 23 1161 1183 1161 1183 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.062	4.7	8.3	0.9	2	23	93	115	92	115	0.96
2	12	0.14	11	7.2	0.6	2	22	156	176	155	176	0.94
3	12	0.02	1.5	9.9	0.1	1	23	296	318	296	318	0.97
4	12	0.00026	0.019	15.8	0.2	1	23	327	349	327	349	0.99
5	12	0.00067	0.051	14.5	2.0	1	23	355	378	355	378	0.97
6	12	0.0027	0.2	12.6	1.6	1	23	731	754	731	754	0.96
7	12	0.00022	0.017	16.0	1.3	2	23	944	965	943	965	0.97
8	12	0.023	1.7	9.7	5.3	1	23	971	994	971	994	0.97
9	12	0.2	15	6.7	1.4	1	23	1024	1048	1024	1048	0.90
10	12	0.073	5.6	8.1	0.3	1	23	1071	1094	1071	1094	0.95
11	12	0.0017	0.13	13.3	0.2	2	23	1134	1155	1133	1155	0.96
12	12	0.026	1.9	9.5	5.3	1	23	1161	1183	1161	1183	0.97

Sequence Information

Coding Sequence: ATGCAGGGAGCCGCGAGCGCGCCCGCGCCACCTGCGGCCGAGCCACCCTCAGCACAACAAATCAAAACAGAAGTCATCATCGAAGCCAAAGTAGAATCCAAAGATCAGGACGAAGAGATGAAGAAGGATAACGAAATGAGGCCCGTCCGAACCAACAGCATTGACAGCGACAATCGCTCGGACAGAAGCGACGATGACGATTGCAGGAAGAACCGCAAGAGGGCGGCGTCCACATCCCCCACGCCCATGCCTCTAGATAAGAGAACCGCTCTCCTAGAATGTACCAAATGTGTCCAAAGATTCGACTCTAGAAATGCCTTCGAGTTGCACAAGCTCACCTACCACAGAGAAGATGCTCGGACTATATTCAATGATCTCTCGTATCCGACCTTCCCCAACAAGAAGTATCCCGACATATCGCGAGGCGCATACGATCGCAACTCTCATCTCGCTGAAGATTATTTACGCTGCGCAAATTGTTCGGAAGAATTTAAATCTTTACATGTTCTGGAAAGTCACCGAAAGACGTGCATTAAATTAAATAGTTCTGAGCACGAGAGAAGAGAGGACTTCTTCTCTAAGCTCGATCTCCGAAACAGATCATTCGGAATTCCAGGAACTTTGACTCCGCCTATGGAGAAATTTCCCCCGAAATATGATGAGGCCCATCTTACAAATGGCCTGAGGCAAATCGATGATTTGGCAGACATATCGTCAATTTTAAATGTTACTTCCGCCAGCAGCCTTCTCGAAAGATTAACAGGGCGAGGATCCTTGCACAACTCCATTCTTACCCCTCCGGATACTGTAGTGAAGGAGCGCGACCAGGAAGAAACTCAGGATAATTTTGCGGCGGAATTTAGACGAATGAAACTGCGTGGAGAGTTTCCGTGTCGCCTTTGCCCGGCTAAGTTTCCCAATCTCAGGGCTTTGAAAGGCCATAACAGAGTTCATTTAAGCGGTACTGGCCCGGGACCATACCAATGTAACATGTGCCCACAATCCTCATTAGACAAAGCTGCTCTCGTTCGTCATATGAGAACTCACAATGGTGACAGGCCGTATGAATGCGCCGTATGCAATTACGCTTTCACTACCAAAGCTAATTGTGAACGCCATTTACGCAACCGGCATGCGAAGGTAACAAGGGAAGACGTGAAAAGGTCTATAATATACCACCCATCTGAAGATCCTAACAATGATGAAATGAACTCCAAAGTAGCTAGAGATGAATTCAAAAGATCATTGCCGTTCCATACTCCAGATTCAGAGCGATCCATGGAACACACTGGAAGGAGTACTCCATTGGGACACTATACACAACCATTTGTCCCTGAACGACAGCACCCTATTTTGTCCTTGACTAAACCCAAAGTTTTGCCCGAGACGCCTACACTTCCACCTAAGGAAAACGAAACCCTAATGCCTAAGATTAACGTGGTGAATTTGGGCAAGTTAACTCAAATACCGGAGTACCGGACGCCTGAAATACCATATAAAGATAATGAACCGACACCTGTAGAGTCATATACTGATGATGCTCCGGTCGATTTAAGTACAAATGACAATAGCTGTGATGTACTTGACCTAAGCAAGAAAAAAAGAGATGTTGATGATGAACAACCTAAGGCTTCACCCCGAGTTCCATTTGAAAGCTCGCCTTTAACTGCAGCATCAGTGGCCGCGTCAGCTATTGAGAAAACGAGATTTCTTCTCGCTCAACAAAGGTTATTTGAAAACTCGATGCCCAAACTTGATACCGCTTATTACGCATCCCAGTTATCTCAACTGTATGCGAACACCGTACCAGGTTTACCTAGCTTGCCTCTGCCTCCTTCTTTTCCTCTCAACCCGTACTTTCTACAGCCGTCGTTTTTTCCTCACCCCTCTGATACTCAAGAACTTGCAGAAATGAAGCAGCACATACAAAAAGTTATATTTCGGGGCCTCAGCATGTCCGGTGGTGGATTAGTAACAAATGAAACCTTACCACAACCAAAACAAGAACAGGAGGATGAAGACCAGAAACCTATACACATAGACACATCCTCTACACCACCTCCAGCTTCGGAATCGCCGCGCCCGCTAAGTAATAGCATGGTCACACAAAATGATTCCGTAAAAATGGTGATTAAGAATGGCATTCTTATGCCTAAACAAAAGCAAAGACGCTACCGCACGGAACGACCTTTCTCCTGCTCTCAGTGCTCGGCAAGATTCACATTACGCTCAAATATGGAGAGACACGTTAAACAACAACATCCGCAACATTGGAGCATCAGAAGACCAACACCACGAGCACCTCCCCCATACCCACAAGACACCATCACAGATCGCGTAAAATACGCTTTACTGGCTGGACAACTAGAACGACCTTTACAAAATGATCGCTCCCCGCCCAGGAGAGATTCCGATGAAGTCGCTGATAACGAGGAAGATGAAGATGACACTTTGATTATCGACGAAGAACCAGAAGATGGAAAACCCGAGGACCACTCAGCGGCCCGACAGGCGGCCGCGGAAATACTTTTGGCTACGAGTCGCCTTGAGATGAACAAAGATTTTGATCTTAAAATTACTGGAAACCTGATCAACAAACCGATTACTATTCCTAACGAAAAAGCTGACGGTATCCGAGACTCATTGAATAAAGAAGACGTAATTCCCGTGGTGCCGACCCGCAGTGACGAAGAAGAAGATGAAGAAGGTCTTGTAGCATCCACGAGTGAGGGAAATAACTCTGGAAGCGACGAAAACAAATCTGAATCGGACACGGGAAACCAGCCACCAAAGAAAAAGTCAGCATACAGCCTCGCGCCGAATCGTGTGTCTTGTCCCTATTGTCACCGCAAATTCCCATGGTCCTCGTCTTTACGACGACATGTTCTTACTCACACCGGCCAAAAACCTTTCAAATGTCCCCACTGTCCCCTACTTTTCACCACTAAATCCAATTGCGACCGCCATCTGCTTCGAAAGCACGGCGGATCTGCAAAAGCTATACTAGCAGATCCCGTTAGCGTATCCCCTCCGCAAGGCAACGATAACCGATCGGTCCCGGAGCGACCGTTTAAGTGCGCTTCGTGCCCGACGAGCACATTCTCATCGATGGAAACCTTAAAAAAACACATGTCCTCTCGCCACGGAACAGGCGAATCTCAGCCCGGCTCGCCCAACCCCGAAACGGAGGAGGCGGACGGAAGCTTAGTCTTCAAATGTCACCTTTGCGAGGCTTCGTTCGGAGACAGGACTGGCGCTCTCGAGCATCTAGCCACCTCCCACGCTACGGAATACGGGCAACTCATCAGCAAAGGCGCCCTCGATGCAGCCAGTGATCGCAGCGAAAGTGCAGATGACGATGAAAGAGGGAAATTCCCGGATCACGCCAATAGAAAGGTCGTATGCGCATTTTGCGTCCGTCGTTTCTGGTCAGCGGAGGACTTGCGTCGCCACATGCGGACCCACAGCGGCGAGAGGCCGTTCGCCTGTGACCTCTGCCGTCGCCGCTTCACCCTCAAACACAGCATGCTGCGCCACCGCAAGAAGCATCGCGAGGAAGCCACGGACGATGAGGAGGCCTCGTCACCTATCGTCGCACACGAGGACGGCGTAGTGAACGGGTTCTGCTACCAGACCGAGGACGGGTCGGGGTCGGAGCAGCCGAGCAACGTCAACAACAACAACTCGCCGCCCGCCGCGCCCTACGACAAGAAGCTCAAACTGGACATGACCTCGCGCAAATACTCCACCGAGAACGAGAACGACACGGAAACCGGCGGCGACCTCATCGGGAAACTCCTCGGCATCCCCGACAAGACCATCATCAACAAGCTGCTGTCGTCCGCGGACGAGGCCGCCAAGTTCCTGGGAGTGAACAAATGA
Protein Sequence: MQGAASAPAPPAAEPPSAQQIKTEVIIEAKVESKDQDEEMKKDNEMRPVRTNSIDSDNRSDRSDDDDCRKNRKRAASTSPTPMPLDKRTALLECTKCVQRFDSRNAFELHKLTYHREDARTIFNDLSYPTFPNKKYPDISRGAYDRNSHLAEDYLRCANCSEEFKSLHVLESHRKTCIKLNSSEHERREDFFSKLDLRNRSFGIPGTLTPPMEKFPPKYDEAHLTNGLRQIDDLADISSILNVTSASSLLERLTGRGSLHNSILTPPDTVVKERDQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPQSSLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEMNSKVARDEFKRSLPFHTPDSERSMEHTGRSTPLGHYTQPFVPERQHPILSLTKPKVLPETPTLPPKENETLMPKINVVNLGKLTQIPEYRTPEIPYKDNEPTPVESYTDDAPVDLSTNDNSCDVLDLSKKKRDVDDEQPKASPRVPFESSPLTAASVAASAIEKTRFLLAQQRLFENSMPKLDTAYYASQLSQLYANTVPGLPSLPLPPSFPLNPYFLQPSFFPHPSDTQELAEMKQHIQKVIFRGLSMSGGGLVTNETLPQPKQEQEDEDQKPIHIDTSSTPPPASESPRPLSNSMVTQNDSVKMVIKNGILMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSIRRPTPRAPPPYPQDTITDRVKYALLAGQLERPLQNDRSPPRRDSDEVADNEEDEDDTLIIDEEPEDGKPEDHSAARQAAAEILLATSRLEMNKDFDLKITGNLINKPITIPNEKADGIRDSLNKEDVIPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTGNQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSAKAILADPVSVSPPQGNDNRSVPERPFKCASCPTSTFSSMETLKKHMSSRHGTGESQPGSPNPETEEADGSLVFKCHLCEASFGDRTGALEHLATSHATEYGQLISKGALDAASDRSESADDDERGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREEATDDEEASSPIVAHEDGVVNGFCYQTEDGSGSEQPSNVNNNNSPPAAPYDKKLKLDMTSRKYSTENENDTETGGDLIGKLLGIPDKTIINKLLSSADEAAKFLGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00406201;
90% Identity: iTF_01178998;
80% Identity: -