Basic Information

Insect: Cyaniris semiargus
Gene Symbol: -
Assembly: GCA_905187585.1
Location: LR994549.1:9111812-9119219[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.015 1.2 10.2 2.3 3 23 31 51 30 51 0.98

2 14 0.00016 0.012 16.5 0.7 1 23 89 112 89 112 0.92

3 14 1.6e-05 0.0012 19.6 0.6 1 23 114 136 114 136 0.97

4 14 0.43 32 5.7 0.0 1 23 171 193 171 193 0.91

5 14 4.3 3.3e+02 2.5 0.6 3 19 217 233 216 235 0.93

6 14 0.032 2.4 9.2 1.2 1 23 245 267 245 267 0.92

7 14 0.00025 0.019 15.9 0.2 1 20 273 292 273 294 0.95

8 14 0.032 2.4 9.2 4.0 1 23 306 329 306 329 0.97

9 14 0.0042 0.31 12.0 2.2 1 23 334 358 334 358 0.94

10 14 5.9 4.5e+02 2.1 2.6 3 23 364 384 364 384 0.94

11 14 0.0042 0.32 12.0 0.3 1 23 389 411 389 411 0.96

12 14 4.1 3.1e+02 2.6 7.4 1 23 417 439 417 439 0.97

13 14 2.9e-07 2.2e-05 25.1 3.9 1 23 445 467 445 467 0.96

14 14 1.5e-05 0.0012 19.7 0.9 1 23 473 496 473 496 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.015	1.2	10.2	2.3	3	23	31	51	30	51	0.98
2	14	0.00016	0.012	16.5	0.7	1	23	89	112	89	112	0.92
3	14	1.6e-05	0.0012	19.6	0.6	1	23	114	136	114	136	0.97
4	14	0.43	32	5.7	0.0	1	23	171	193	171	193	0.91
5	14	4.3	3.3e+02	2.5	0.6	3	19	217	233	216	235	0.93
6	14	0.032	2.4	9.2	1.2	1	23	245	267	245	267	0.92
7	14	0.00025	0.019	15.9	0.2	1	20	273	292	273	294	0.95
8	14	0.032	2.4	9.2	4.0	1	23	306	329	306	329	0.97
9	14	0.0042	0.31	12.0	2.2	1	23	334	358	334	358	0.94
10	14	5.9	4.5e+02	2.1	2.6	3	23	364	384	364	384	0.94
11	14	0.0042	0.32	12.0	0.3	1	23	389	411	389	411	0.96
12	14	4.1	3.1e+02	2.6	7.4	1	23	417	439	417	439	0.97
13	14	2.9e-07	2.2e-05	25.1	3.9	1	23	445	467	445	467	0.96
14	14	1.5e-05	0.0012	19.7	0.9	1	23	473	496	473	496	0.97

Sequence Information

Coding Sequence: ATGGCTTCGCTTTCCCATTTAGACCCAGATAGCTCAACATTGAGGCTGGCACCAAAACAAACTACGATTGATTTGATCGGTGGTATACTGTGCCATATTTGTCGTTCAACATTTCCTGATAAGAAAAATTATGACAAGCACTACAGTATACATGAAAGTGACAAAACCAAAATAATCTACACATGTGTGGTATGTTCCAAAGAAATAGCCGGATACCCAAGTTTCCGTGGCCATTGTTACACAACACATGTTATGAAAGAAAAATACAAATGTGAGATATGCAACAAAACTTTTGCAAAAGTAACCACTCTTAGGGAACACAAGATTGCCAAGCATTCATTTAAATGTGGAACATGTGATAAAGAATTCAATTCCAGTAAGGAGCTGCAAGTTCACAAAATTATACACACCCAGACCGATACACCACCATACAATTGCCAAATGTGTAACACCAAAATTGATTCCATAGAAGGCTGCCACGACCATGTAGATTTGCACTGCAAAAATATTTACTCATGCCCAGTGTGCAACGAGAGTATACCAGACATCAACAAAGCAGTTGATCACCTGAAAATCCATTTTGATGAGGAGGCTGATGATATAAACGCAAATCATAATGATAAGTCCGATAAAATTGGGGGAATTTTGTGCTCATTATGTTCTCATGCATATAAAAACCGAATGGAGTTTGATGCACATTTTTCTTGCTGTCATGGAGATGAGGATGTGGTCTACACTTGTGTTGTGTGCGGAAAACAGTTTGAAAAATACTCAGTCTTCTATCAGCATGCCTATAACCATGTCACTAAGAACAAATTTGAATGCAATATATGCTCCAAAACCTATCCGCGCATCTCCCTACTTGTTACACATATGGCCCACTGCCAGAAGGACAACAGCGCGACCGGCAAACCATTTGTTTGCCACAAGTGCAACCACAGATATGGTACCGAAAATCGCCTTCGTCTGCATTTAAAAGTCGAACATAATATATTCCAGTTCGAATGTCTAGAAGAAGGCTGTGGAAAAAAATTCAAAACATCTTGTGAATTGATATTCCACCAAAGATACCATTCTAAGGCGAAGTGGTGCGGTCAGTGTGGCTACCTCTTCACATCTCTCCACACGTGTTGGTCACACCTCGACGTGCATAAGAAGCTGCTATTCATTTGTCCGATATGCAATCGCAATTACTCCGAAAAGAATAGCATTCTGAATCACGTTAACCAACATTTCGAAACACTACTCCACATGTGCAAGTTCTGTTGCAAAGTTTATAACGCCAAAAATCGTCTCAAGGAGCACATGAAGAAACATTCCGACAACAAAATTCACGCCTGCAGCTACTGCGGCAAGAGCTTCGTGAGACTGAGTCACCTGCAGCAGCATCTGAACACGCATACAGGGGCGAAGCCATACAGCTGTCCAGTTTGTCCAAAATCGTTCTCGTCGCTACCAAACTGGAGCAAACATCTGCATAGAATGCACAAAGTTAATGGAACTCAATATAAAAAGGAATTCGAGGCTGTAAAAGCTAATGCGATTGAAAATTATGATGCAGATACAGTTGACAAAAACAATGAAAATATGGATACAGGGGAAGCAAAATCAGACAGTTCTAAAATGGATGTTTGTGAAGAAAAATCAGCAGGAAATAATAACTCATTGTTAGAAAGCACACAGTTGCATGAGCCCGACAACAGTTCAGTGGAGACTGACGTCATCGATCATTGGCTCATCGAGAAAGAATTAATACATTTTGAAAACAATTTCAATAAGGAAAACAGTATCATCCAAAATGTGGATATCTCATCGACGACAGAAGATCTTATTCGGACCCTGGAGGCGGACATACCACAGATTCCTCAAACTAACTACCCTCCCGAATATGGTCCCGAATTCAACATCGGCCCCGAGTCCGGGAGCAGCAGCAGTTTCATAAATCTGGATGACCACAACCTGCCTCACATTGATCCCCTGCTGACGATAAAAATTGAGGAGCATAATCAAATCTATAAAAACATGCCAGCAGATCGAGGAAATTTCGTACCAAATATCGAGTATATCGACTACGATGCTCCGAAATGGGAACCACCAATCCTAAAGAAGGAGGATACGTTCGAAACCAACAACAAGCTGATGTTATGGAACGGTGATCATTTTGAAGTTTTTACATAA
Protein Sequence: MASLSHLDPDSSTLRLAPKQTTIDLIGGILCHICRSTFPDKKNYDKHYSIHESDKTKIIYTCVVCSKEIAGYPSFRGHCYTTHVMKEKYKCEICNKTFAKVTTLREHKIAKHSFKCGTCDKEFNSSKELQVHKIIHTQTDTPPYNCQMCNTKIDSIEGCHDHVDLHCKNIYSCPVCNESIPDINKAVDHLKIHFDEEADDINANHNDKSDKIGGILCSLCSHAYKNRMEFDAHFSCCHGDEDVVYTCVVCGKQFEKYSVFYQHAYNHVTKNKFECNICSKTYPRISLLVTHMAHCQKDNSATGKPFVCHKCNHRYGTENRLRLHLKVEHNIFQFECLEEGCGKKFKTSCELIFHQRYHSKAKWCGQCGYLFTSLHTCWSHLDVHKKLLFICPICNRNYSEKNSILNHVNQHFETLLHMCKFCCKVYNAKNRLKEHMKKHSDNKIHACSYCGKSFVRLSHLQQHLNTHTGAKPYSCPVCPKSFSSLPNWSKHLHRMHKVNGTQYKKEFEAVKANAIENYDADTVDKNNENMDTGEAKSDSSKMDVCEEKSAGNNNSLLESTQLHEPDNSSVETDVIDHWLIEKELIHFENNFNKENSIIQNVDISSTTEDLIRTLEADIPQIPQTNYPPEYGPEFNIGPESGSSSSFINLDDHNLPHIDPLLTIKIEEHNQIYKNMPADRGNFVPNIEYIDYDAPKWEPPILKKEDTFETNNKLMLWNGDHFEVFT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00935140;
90% Identity: iTF_00935140;
80% Identity: -