Csei016951.1
Basic Information
- Insect
- Cyaniris semiargus
- Gene Symbol
- -
- Assembly
- GCA_905187585.1
- Location
- LR994563.1:1483321-1488065[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0024 0.18 12.8 1.6 1 23 262 285 262 285 0.94 2 12 0.0016 0.12 13.3 3.1 1 19 302 320 302 324 0.95 3 12 9.7e-06 0.00074 20.3 1.3 2 23 330 351 329 351 0.97 4 12 3.7e-06 0.00028 21.6 1.4 1 23 355 378 355 378 0.97 5 12 0.19 15 6.8 0.6 1 23 381 403 381 403 0.95 6 12 3.3e-05 0.0025 18.6 0.5 2 23 476 497 475 497 0.96 7 12 0.31 23 6.1 0.5 3 23 518 539 517 539 0.93 8 12 8.8e-07 6.6e-05 23.6 4.1 1 23 545 567 545 567 0.98 9 12 0.0019 0.15 13.1 2.2 1 23 572 594 572 594 0.97 10 12 0.00017 0.013 16.4 3.5 2 23 601 623 600 623 0.93 11 12 2.7 2e+02 3.2 2.0 1 19 630 648 630 649 0.86 12 12 0.5 38 5.5 3.1 3 19 662 678 661 683 0.92
Sequence Information
- Coding Sequence
- ATGGAAAACGTAGACAGTCAGACCGATATAATGTACCCGGTGATTTTCATACCGAAAAACTGCACGAATCTCCAGACGGAGTGCGAAGCGACGGATAATGTGTTCATAGACCTGAATATAACGTCTTTAGACACGGAGGGGAACGAGATGAGCATCTACAACGGGTTCTGTAACGTCAAACTGGTGGACAGCTACGATGTGAACGTCCAGGAGGTGGATTCCACCCAGCCGGATTCCCTGGACATCTCGTCCGAGGTCCAGATACCCAACTCGTCGTACAACCAGTCCCAGGTCTGGATAGACCCGGCTAGGAGTCCCTACGTCTATAACAACTACGAGGGAGTAGCCCAGGAGCATATCCACAATTCTCGCATAACAGTGGAACAGCACAACACGTATATTACTCAAAACGTATATAACTATACCGAAATCAACGATTATAGCGATCAATTCGAGCACAAGAAGTTCAGGAAGGTGCAGGAATTGAACCAAATAGATTTATATAAGGACGACGAGATAGAATGTGAGCAGCTGGAATGTACGGAGATAGTCGAAGAAGAAATCGAGGATCCTGTTAAAGATAATGACGCTCTCAAGCAGCTCATGTCGACAGAGATTCAGCCAGTTTCAAAGCAGCAGAAGACTATTTTGTATGTCGGGGACGATTCCCAGTATGGACAGACCATACAGAACATTGCTATCAACGATCCGAATGTAGAATGCGTAGATAACGTTGAATGCGGAGAGTACGTCTATGAGAACAATGAAAACACCAAAAAGAAATATCAATGCGATAAATGCAAACAAATATTCTACAATCTAATAACATTCAAACGTCACGTAGTCAGCAGTCACAGCCATAAACTACCAGTTATTGAGACAGACACGACGACTGAAGTCAAATTCACTTGCTCCGAATGTGGTAAAAATTTCAAAAGCCAGGAGAAATTCGAATTACACTGTGTAGGCCACGGTGACCCGGACCTGGAATGTGACAAGTGCAAAAAAGTTTTCGCGTCGAAGTTCACTCTTCGCACCCACCTCAAAATCCACAACAGGAAATACTCGTGCACTCATTGTCCGAAATCGTACACCAGCGATGACGATTTGAAAAATCACATGGCGAAAATTCATTTCGTATTCGCTTGCAACCAGTGCGAGTTCACGTCGAATAGTTATTCATCTCTGGACCTACATAAAGACATTCATAAGGTGAACAAAGTTATGAGCGATACGGAGTCAGCGGTGTCCCTCGATTCATCCAGTAACCATTCCATAGTGCTCGATGAGGACGAGGATGTGGAGGAGTTCCTCACCAGACACCAGCAGATCGAGGAAGCGGAGTCGGTGATAGCTAAGGTCATAAGCAATGAGATCTTTCTGTTACACGCGAAAAAGGCGAGGAAGCATCGTAAGTTTAACAAGAAATGTGAAGTATGTCAAAAGACCTTCGACCGTGTTGGTGATCTCAAGAGACATCTCATAGAGCATGTGATAAGAAGCACACTGGCCAAAACACCGATCAGCAAGAATGGAACTCTCACGATATTATGCGAGGTATGCCAGAAGGAAACCTTCACGAAGATAGATAAATATAAAGCCCATTTAAGGGAGCACGCGAAACTAACCATCTACAAGTGTACCTTCTGCGATAAGTCCTTCAGTGACTCTAGCAATTTCTCGAAGCACAAGAAGATTCACGGTGCAACATTCTTCCAATGCGATCTCTGCCAACGTAAGTTTAACTCCAAGAGGATGATCACCCAGCATCTCGAGTATCATAGGAACCACTCTCCGTTGCCGTGCTTCTACTGCAACAAGACTTTCCACTTCAAATCGATGCTAAATAAGCACATCAAATTCGCTCACATGCAGGAAACTTCGAAGTTCCGCTGCCGCTTCTGTCATGAATATTTCCGAAGTTTGAAGGAGAAATGGGATCACGAGTGGAAAATTCACAACGTTAGGAAAATCATCGTGGACTGTCTGATTTGCGGGGCCAAGTTCAGAAAATATTTGGAGTTAAAACGACATTGTCACAATGTACATGAACTGGAAATACCTTTGGCAAAAAGTATAATGGGCAACGCATATGTCGCCAGAAGGGACTAG
- Protein Sequence
- MENVDSQTDIMYPVIFIPKNCTNLQTECEATDNVFIDLNITSLDTEGNEMSIYNGFCNVKLVDSYDVNVQEVDSTQPDSLDISSEVQIPNSSYNQSQVWIDPARSPYVYNNYEGVAQEHIHNSRITVEQHNTYITQNVYNYTEINDYSDQFEHKKFRKVQELNQIDLYKDDEIECEQLECTEIVEEEIEDPVKDNDALKQLMSTEIQPVSKQQKTILYVGDDSQYGQTIQNIAINDPNVECVDNVECGEYVYENNENTKKKYQCDKCKQIFYNLITFKRHVVSSHSHKLPVIETDTTTEVKFTCSECGKNFKSQEKFELHCVGHGDPDLECDKCKKVFASKFTLRTHLKIHNRKYSCTHCPKSYTSDDDLKNHMAKIHFVFACNQCEFTSNSYSSLDLHKDIHKVNKVMSDTESAVSLDSSSNHSIVLDEDEDVEEFLTRHQQIEEAESVIAKVISNEIFLLHAKKARKHRKFNKKCEVCQKTFDRVGDLKRHLIEHVIRSTLAKTPISKNGTLTILCEVCQKETFTKIDKYKAHLREHAKLTIYKCTFCDKSFSDSSNFSKHKKIHGATFFQCDLCQRKFNSKRMITQHLEYHRNHSPLPCFYCNKTFHFKSMLNKHIKFAHMQETSKFRCRFCHEYFRSLKEKWDHEWKIHNVRKIIVDCLICGAKFRKYLELKRHCHNVHELEIPLAKSIMGNAYVARRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00935097;
- 90% Identity
- iTF_01248473;
- 80% Identity
- -