Csei000597.1
Basic Information
- Insect
- Cyaniris semiargus
- Gene Symbol
- -
- Assembly
- GCA_905187585.1
- Location
- LR994559.1:10013935-10027976[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00031 0.023 15.6 0.2 2 23 136 157 135 157 0.93 2 10 0.00011 0.0081 17.0 0.2 1 23 163 185 163 185 0.96 3 10 0.24 18 6.5 0.4 2 23 233 255 232 255 0.94 4 10 0.0011 0.086 13.8 0.0 3 23 301 322 299 322 0.90 5 10 0.024 1.8 9.6 0.1 1 23 338 360 338 360 0.96 6 10 6.4e-06 0.00048 20.9 0.2 1 23 389 411 389 411 0.98 7 10 0.00048 0.036 15.0 0.2 1 23 417 439 417 439 0.97 8 10 0.00027 0.02 15.7 0.3 1 23 445 467 445 468 0.95 9 10 0.0053 0.4 11.7 0.5 1 23 481 503 481 503 0.96 10 10 0.0011 0.081 13.9 0.1 1 20 596 615 596 618 0.93
Sequence Information
- Coding Sequence
- ATGGAAGGAGAAGATTTTAAATTGCAATGGGAGGAGGATGAGAAGCCTAACATGGTAGTGACTGAAGAAGTGATATGTGGTTTGGAGACTGTACAAAATGTCTCGTATACAAATATGACTGCCGAAGAACTAATGGCGCATCCTCATCAGACTGCTGCAGAGAATTTGATGTATTTATCCCAAGATGTAGTCTACACGGACAATGCACATTTAGTTGAAGACCCCAGTGTAGAGTGCGTGACAGAGGAGGTCATAACAGATGATTGGGTCCTTACTGGAGGCCAAGACAGGGTGGAAGTGCCTTTGGAACAGTTGACTAATCCTGTGTCAGATGTGAAGATAGAAAATGATATCGATGTGCCACTACCTACGGATCAGGACGAGTACACAGCTATGCGTCCGTGGCCGTGCGACTTCTGTTCACGTCGGTTCCGAAAGAAGGCTGCGCTGATGAACCACATGGTAGCGCACCAGAGCGACCGGCCGCACGCGTGCAACCTGTGCGGCGTGCGGTACGTCCGCAAACCCGACCTCATGGCGCACCTCAAGGTGCACGCTTACCAGCCCGACAACATGACCTTTGTGGAAGATGCTGTTATAGATAATAATTCGTTACTAAAACCAAGGAAAAAACGTGGACGCCGAAAAAAAGCCCCTCAACCACCACCAGAGATCCACGGCGGCGACTCGCCCATAGAGTGCAGCGTGTGCGGCGAGCTGTGTTGGTCGCGCGACGCTCTGCGGTCCCACACGCGCGCACGACACCCCGATATGCCCGCACGCACAGAGCCACCACCGCAGGACTTTGGAGACACCGACTCTGACGACGACATGGAGTATCAAATGTCGCCGGTCGCCGCGACAGAGAGTCGCGACAACGTGCGCGGCCCTGAGCTGTTCTGTGGCGAGTGTGGTGTTGCGTTTCAGCGAGCCGACCTGCTGCGACGACACGTTGCCGCTGCACATAGTTACAAGCGGCAGCAGCACGACAGCAGCGGCACGTGGGAGCAGCACACGTGCGAGGTGTGCGGCGAGGCGTGCGGGGACGCGCTCACGCTGCTCGCGCACGCTGAGCGGCACGCCGAGCGCCCGCGAGCCGCGCACAGGCTTAAAAAAATGTCGCGAGGACGTCACACGACGACATCAGCATCCGGCGTCAGACAGTTTCCGTGCAAAGAATGCGGCAAGGTGTTCGGTTCGCGTAGCTCGCAGCAGATCCACGTGCGCATCCACACGGGCGAGCGGCCGTACGCGTGCCGGTTCTGCTGGAAGGCGTTCGCGGACGGCGGCACGCTGCGGAAACACGAGCGTATACATACCGGTGAGAAGCCGTACGCATGCGCCGTGTGCCCGCGCGCGTTCAACCAGCGCGTTGTCTTGCGGGAACACGTACGCAGCCATCACTCCGCGCCAGACCGCCGCGCATACGGTGGATATCAGTATTGTTGTTCGGTGTGCGGCAAGCCAATGAACTCTAGTCAGGAGCTAGTTCAACATCTCATACAGCACTGCGACGAAAACACAGCCATGAAAAGACAGCCCCAGAACGGGCCTAGAAAATACAAACAGGAGCCGCGACCGCGCACTAAACAGGTCCGCGGTCGGCGACCGCCGCGGCACCCGGCGGACGACCTGCTCGCGATCGGCCCGCACTCGCCGTCCCCGCCGCCGGCCGCGTCACCGTTGTCGTCGCCGGTGCGCGTCAAGACGCCGCAGTCACCGTCACCGGTGCGCGTCAAGTCGCCGCTGCCGTCTCGGTCACCGTCACCGACACTCGAGGGGCCGTTTAAGTGCGAGATGTGCTCGGAGGTTTTCCCGCGCCGAGACGCGCTACTGCTTCACGTGCCCGTGCACATATGA
- Protein Sequence
- MEGEDFKLQWEEDEKPNMVVTEEVICGLETVQNVSYTNMTAEELMAHPHQTAAENLMYLSQDVVYTDNAHLVEDPSVECVTEEVITDDWVLTGGQDRVEVPLEQLTNPVSDVKIENDIDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQSDRPHACNLCGVRYVRKPDLMAHLKVHAYQPDNMTFVEDAVIDNNSLLKPRKKRGRRKKAPQPPPEIHGGDSPIECSVCGELCWSRDALRSHTRARHPDMPARTEPPPQDFGDTDSDDDMEYQMSPVAATESRDNVRGPELFCGECGVAFQRADLLRRHVAAAHSYKRQQHDSSGTWEQHTCEVCGEACGDALTLLAHAERHAERPRAAHRLKKMSRGRHTTTSASGVRQFPCKECGKVFGSRSSQQIHVRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRAYGGYQYCCSVCGKPMNSSQELVQHLIQHCDENTAMKRQPQNGPRKYKQEPRPRTKQVRGRRPPRHPADDLLAIGPHSPSPPPAASPLSSPVRVKTPQSPSPVRVKSPLPSRSPSPTLEGPFKCEMCSEVFPRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00934083;
- 90% Identity
- -
- 80% Identity
- -