Csei002736.1
Basic Information
- Insect
- Cyaniris semiargus
- Gene Symbol
- -
- Assembly
- GCA_905187585.1
- Location
- LR994564.1:5528713-5539483[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.11 8 7.6 0.4 1 20 6 26 6 28 0.90 2 13 9.4e-05 0.0071 17.2 0.2 2 21 34 53 33 54 0.94 3 13 0.1 7.7 7.6 0.4 1 13 199 211 199 213 0.88 4 13 7.6 5.8e+02 1.7 0.3 1 17 307 323 307 324 0.84 5 13 3.7e-05 0.0028 18.5 0.4 1 23 332 354 332 354 0.98 6 13 0.00025 0.019 15.8 2.8 2 23 385 406 384 406 0.97 7 13 0.00012 0.0087 16.9 0.3 1 23 458 480 458 480 0.97 8 13 0.0035 0.26 12.3 2.5 1 23 496 518 496 518 0.98 9 13 1.2e-06 9.4e-05 23.1 4.5 1 23 524 546 524 546 0.98 10 13 0.0019 0.15 13.1 6.4 1 23 552 574 552 574 0.97 11 13 1.7e-06 0.00013 22.7 0.4 1 23 580 602 580 602 0.98 12 13 0.00039 0.03 15.2 0.1 1 23 606 628 606 628 0.97 13 13 0.0021 0.16 12.9 0.0 1 23 636 659 636 659 0.95
Sequence Information
- Coding Sequence
- ATGGCAGACTCCTGTTATTACTGCCCATTATGCTGCAACATGCAATTTACCTCAAAAGAGGATCTCGTAGTTCATCTGAGCGAAATATCTTCGAATATAAAGTGCCCTATTTGCACCAAGACATTTTCCACTTTCAGTCTTATCATGAAACATTTAAAAGTTGATATGTGTGAAATCAATTTTAAAGATTCAAATAGGACTTTAGAATCTACTTTAGCCATAAGTGATAATATGGAAACTATTACAAACCCCAATTTAAATCAAACATCAGTTGAAAGCATCTCAAGTAATGACTCATTTGGTCAGTCGTTAGTAAATCATGATGGTACAGGGGTGTCGGAGGACTATGTAGACATGATAAGCAGTCAGCTGGAAAAACCCTGTATTCAAGATCAAGATTTGAAATTCATAAAAGAGGAAGCAGATGGCCAATACCTAATTCTGCCAGATGGTGCCCTGTTAGATGCAGGCAGTGTTGTTACCAAACAAAACAAAGATGGCACTATCTCCTTAAACAGTATTAATGATGACAATTTTGAACATGAAACAGAGTTTGTTACATTGAATAGTGAAGCAGAGGACAAGGAAGAAATTTATTCATGTAATACTTGTGGAGTATCTTTTACATCTGTCTCCGATCATATACAAAATTACCACACTGATCAAGTTGTTGTGGTTGAAGGTAATGACGAAGCTCCAAATGATAATGGCATGTCAGAGATTTCCTTAGAAATGGAGTCTTCGTCCCAAAATGATCAGTCTGAGGACAGGCAGACCTCACGGAGAATGATCACTGAAACTGGAGACATTGTGGAAGAACCACTAGACAAAGAACAGACTCAACGTAAAGATTTATACTACCATAAATCTGTGGTCATGAAGGAGATGGAGACAGAGACCGGCAACTCTATCCAAGTGTACAACTGTACTCAGTGTCACCTATATGTCACAACTCTGGCACAGTTTCAACAGTATCCCTGTAAAAAGTCTGAGTACCCATGCTCTCAATGTAGTGTAGTGTATAAGAACGCCAAATCTTTGTCAGCCCATATGAAGAAACACAAAGTCAAAATTCCTACTATACCTAAATTTTTGGAGAAAACAAAAGTTACAACAGAATTTTCAGCGTCAGACAGACTCTCAGACAACCTTCAGTGTGAGATATGCTCGACGACTTTCACCACAACCAAGTCTTTTAAACTCCACAAGAGGATGCACGATCCTATTAAGTCCCGTCCAATAGAAGCACCTTTCGTAACACAATACGGAACCACTCCGAGCGATGAGAAGTATCTATGTGTGGTGTGTGACAAGATGATACCGCTCGACTATAGAACTATACACGAGAAATCGCACAAGGCGGACAATACGTACATATGTGATGTGTGCAACAAACAGTTCGAGTCGCGAGAGTATCTGGATATGCATATGACTGTACATAATACTGAAAAGGTGACAGTAGGTAGTCAAGACAAATCTCTGCCCTACAACTGTTTATACTGCACGAGGAAGTTTGCCCGCCCACATGAAAAGGTCAAACACGAGAGGATACACACAGGCGAGAAGCCGCATTCGTGCGAGATCTGTGGCAAGTCTTTCCGAGTGTCGTACTGCCTCACGCTGCACATGCGCACACACACCGGCGCGCGACCCTACGCCTGCCCGCACTGTAATAAAAGGTTCAAAGCTCACAGTGTGTTCAATCATCACCTGCTGACTCACTCCGAGGTTCGCGCGTACAAGTGTCCGTACTGCCCCAAGGCGTTCAAGACGTCCGTACAGTTGGCTGGTCATAAGAACTCACATACAAAGCCCTTCGCCTGCCAGCAGTGTAATAGGCCGTTCGCGTCGTTGTACGCGGTGCGCGTGCACATGGAGTCGCACGCTAAACAGAACAGCCTGAAGTTCGCGTGCGCGCTGTGCGGCGCCAGCTACGCGCGCGCCTTTGCACTCAACGACCACGTGCGACAGGCGCATAACGCTGAGCAGATAGACATTAAGGACAGTGAATGGACGGTAGAAGAGAGTATAGACCCGACTCAAGAATTGACAGGTCTGAACACAGAACGCCATGAAGGTAAGTACTAA
- Protein Sequence
- MADSCYYCPLCCNMQFTSKEDLVVHLSEISSNIKCPICTKTFSTFSLIMKHLKVDMCEINFKDSNRTLESTLAISDNMETITNPNLNQTSVESISSNDSFGQSLVNHDGTGVSEDYVDMISSQLEKPCIQDQDLKFIKEEADGQYLILPDGALLDAGSVVTKQNKDGTISLNSINDDNFEHETEFVTLNSEAEDKEEIYSCNTCGVSFTSVSDHIQNYHTDQVVVVEGNDEAPNDNGMSEISLEMESSSQNDQSEDRQTSRRMITETGDIVEEPLDKEQTQRKDLYYHKSVVMKEMETETGNSIQVYNCTQCHLYVTTLAQFQQYPCKKSEYPCSQCSVVYKNAKSLSAHMKKHKVKIPTIPKFLEKTKVTTEFSASDRLSDNLQCEICSTTFTTTKSFKLHKRMHDPIKSRPIEAPFVTQYGTTPSDEKYLCVVCDKMIPLDYRTIHEKSHKADNTYICDVCNKQFESREYLDMHMTVHNTEKVTVGSQDKSLPYNCLYCTRKFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCNKRFKAHSVFNHHLLTHSEVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFACQQCNRPFASLYAVRVHMESHAKQNSLKFACALCGASYARAFALNDHVRQAHNAEQIDIKDSEWTVEESIDPTQELTGLNTERHEGKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01217708; iTF_01248423; iTF_00935042; iTF_00934075;
- 90% Identity
- iTF_01248423; iTF_00935042; iTF_00934075;
- 80% Identity
- -