Csei000770.1
Basic Information
- Insect
- Cyaniris semiargus
- Gene Symbol
- -
- Assembly
- GCA_905187585.1
- Location
- LR994559.1:13356833-13369435[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00029 0.022 15.7 3.4 1 23 240 262 240 262 0.98 2 11 0.00019 0.014 16.2 6.6 1 23 268 290 268 290 0.96 3 11 0.0018 0.14 13.2 6.9 1 23 296 318 296 318 0.98 4 11 0.0013 0.1 13.6 1.0 1 23 324 346 324 346 0.96 5 11 7.5e-06 0.00057 20.7 0.9 1 23 352 374 352 374 0.97 6 11 4.9e-06 0.00037 21.2 0.0 1 23 380 402 380 402 0.98 7 11 0.00042 0.032 15.2 0.5 1 23 407 429 407 429 0.96 8 11 0.00074 0.056 14.4 0.2 3 22 437 456 436 459 0.89 9 11 2.9e-05 0.0022 18.8 0.4 1 23 568 590 568 590 0.97 10 11 0.00015 0.011 16.6 1.5 1 23 654 676 654 676 0.96 11 11 3.1e-05 0.0024 18.7 4.3 1 23 686 708 686 708 0.97
Sequence Information
- Coding Sequence
- ATGTGTATGCCTACGCCGAGCAACGTCTCGGGTTTTGGGTATTCTTGGGGGTTCACGAGCACTGCAGATCCCACAAAATGTGAAGTGGACACACCAAATAGTTTGAGCTACACACTAGGAAACACAGTTTCCCCAGAAACCACTTTGACTGTTATGTCACATAAGACACCGCAGGTGCAAGAAAAAGTTGGAGCACTTGCGGTGACAGTGTCTGCGAATTCCGCAGCTCAAGTCACCAGAGTCGTGACAACTGGTATGCCAATGTCTGGCCGGAAGGCCATGTTCGTACTCAATGAAGCACCAACACAGAACATCCATCATAAGAACCAACAGCAAAATCAAACTACTACAATTCAGACTGCAAACCTGGCGTCCAAACCGTTTATGACACCGATAGGTCCAATACAACTGACCGCTGAGGAGTGTAATGAGATATTGATGAAGCGGGCACTCCAGGCCCAGGGTATAGCAACACCGGTCATTGATGCGTCGCAGCTTAATCATACGTTACTCAATGGAGGCTTAAAAGGCTTAGCAGAGGCTACAAATCAGCAGCAAACGGAAACTATACAGACTTCGGTGCCACAACATCATCTTATACACGCTAAACAGGAGCCAGGAACAACTAATAATTCTCCAAAAACGATATATTCGCAGACGGAGATCATGACGAACACGGTAATGGCAGTATCCCAGCCTGTTGCAAAAGAGAGGCCGTACTCGTGCGACGAGTGTGGCAAGTCCTTCCTGCTCAAACACCATCTCACTACGCATGCGAGGGTGCATACAGGTGAGCGTCCACACGTTTGCGGACACTGCGGTAAGGCGTTCGCCCGCAAACACTGTCTCAACACGCACCTGCTGCTCCACTCTGCCGACAGGCCGTACCGCTGTCACGAGTGTAAGATGGCCTTCACACTGAAACATCATCTGGTTACGCATTCTAGGGTGCACAGTCGCGAGCGGCCGTTCATCTGCGGGGAGTGCGGACGGGGATTCCCCCTCAAGCGGCACCTCGTCACGCACAGCAAATACCACGCCGGCGAGCGGCCTTACGTGTGCAACGAGTGCGGAGAGAGCTTCGCGCAGAAGGAGCACCTAGTAATGCACAGCCGTTTCCACGGTTCCCTATCACCGTTTGTCTGCCCTGACTGCGGTGTGGCCTTCGCTCGGAAGTTCCAGCTGGTCAACCACGGCCGAGTACACGGCCGGGTGCCTCACGCCTGCCCCGTCTGCTCGAAAGAGTTCCTTCAGAAGAGAACGCTGGCTGCTCATATGAAAATTCACACTGGAGAAGGTGTCGTAGCGTGCCTTGAATGTGGAGAAGTGTTCAAAAGCAAGGAGGATCTGTTGCAGCACTCTAAAATAACGAGGCACTGTTTAAATCTGCAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACCACAAATAGTTCAGGTTATCGGTGCTGATGGTCAAATTATTTCGGAGAAAGCTACAGGCTATGCGTGTCCGGAATGTGGCTCGTGTTTCAACACAAAAGAGGCGTTATCGTTGCACGTGCGACTCCACGCGGGCGACCGCACCTGCGTGACGGACCTGTGCGCGCTCACAGCGGGCCTGCAGCCGGGACTTGTTGCCGCACACCACGCTACACATAGTCAACCCATTCAGATAATCGCGTCCAATCCTAATAGCAATGTAGTACATACACAAGTTATAGCCACGAATCACCACATAGCTTCGCCAAGGCCTAAATTACATTTTTGTGTAGACTGTGGAAAGGGATTCGCAGCGAAACACGGACTGTTGGCTCATCAAAGACGGCATCCGGACGGTAGTTGTACGTTACGGACGCACGTCTGCGATCAGTGCGGCAAGGCGTTCTTCCAGAAGAATCATCTCATGCTGCACCAACGGCAGCATATGGATCTGCCGCCGAGGAATGTGACGAACCGGTCTGGTCAGGTGATCGGCAACCAGATAGTGGTGGGCGGACGGCGGCTGATGGCGGGCGGCTCGCAGCTCCAGCTCGTCGACCGCGACGGCAAACCCCTGGCGGCGCAGCTCGCGCACAAGCGGCACTTGGGCGGGCCTGACCTGAAAGACGTCGGTGGCCTGGTGATCCGGTCGCCGGGTGGCACAGAGCTGATCAAATACGAGATATGTCTTCCCTGA
- Protein Sequence
- MCMPTPSNVSGFGYSWGFTSTADPTKCEVDTPNSLSYTLGNTVSPETTLTVMSHKTPQVQEKVGALAVTVSANSAAQVTRVVTTGMPMSGRKAMFVLNEAPTQNIHHKNQQQNQTTTIQTANLASKPFMTPIGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTLLNGGLKGLAEATNQQQTETIQTSVPQHHLIHAKQEPGTTNNSPKTIYSQTEIMTNTVMAVSQPVAKERPYSCDECGKSFLLKHHLTTHARVHTGERPHVCGHCGKAFARKHCLNTHLLLHSADRPYRCHECKMAFTLKHHLVTHSRVHSRERPFICGECGRGFPLKRHLVTHSKYHAGERPYVCNECGESFAQKEHLVMHSRFHGSLSPFVCPDCGVAFARKFQLVNHGRVHGRVPHACPVCSKEFLQKRTLAAHMKIHTGEGVVACLECGEVFKSKEDLLQHSKITRHCLNLQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPQIVQVIGADGQIISEKATGYACPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAGLQPGLVAAHHATHSQPIQIIASNPNSNVVHTQVIATNHHIASPRPKLHFCVDCGKGFAAKHGLLAHQRRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPPRNVTNRSGQVIGNQIVVGGRRLMAGGSQLQLVDRDGKPLAAQLAHKRHLGGPDLKDVGGLVIRSPGGTELIKYEICLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00289043;
- 90% Identity
- iTF_01217699;
- 80% Identity
- -