Csei002026.1
Basic Information
- Insect
- Cyaniris semiargus
- Gene Symbol
- -
- Assembly
- GCA_905187585.1
- Location
- LR994569.1:1427718-1451395[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 7.8e-06 0.00059 20.6 3.0 2 23 236 257 235 257 0.96 2 17 4.3e-05 0.0033 18.3 3.8 1 23 263 286 263 286 0.94 3 17 0.0001 0.0078 17.1 0.6 1 23 291 313 291 313 0.97 4 17 0.00015 0.011 16.6 1.0 1 23 319 341 319 341 0.98 5 17 2.2e-05 0.0017 19.2 4.8 1 23 347 369 347 369 0.98 6 17 2e-06 0.00015 22.5 2.2 1 23 375 397 375 397 0.98 7 17 5.1e-06 0.00038 21.2 1.3 3 23 496 516 495 516 0.99 8 17 8.9e-05 0.0068 17.3 6.2 3 23 524 544 522 544 0.98 9 17 1.6 1.2e+02 3.9 1.4 3 23 552 572 550 572 0.96 10 17 1.4e-06 0.0001 23.0 1.7 2 23 593 614 593 614 0.97 11 17 0.00026 0.02 15.8 0.6 1 23 620 642 620 642 0.98 12 17 0.00011 0.0085 17.0 0.8 1 23 648 670 648 670 0.95 13 17 2.7e-05 0.002 18.9 4.3 1 23 676 698 676 698 0.97 14 17 5.2e-05 0.0039 18.0 2.1 1 23 710 732 710 732 0.98 15 17 0.00079 0.06 14.3 4.6 1 23 738 760 738 760 0.98 16 17 9e-06 0.00068 20.4 1.5 1 23 766 788 766 788 0.98 17 17 0.00075 0.057 14.4 4.4 1 23 794 816 794 816 0.98
Sequence Information
- Coding Sequence
- ATGGCCTCATCTGGACAGGCTCTTAGACTGGAAACATCTGATTCTCCACAAGTTATTTTGACATGGATAAGAGATATTGAGTTCTGGATGTGCTACATCTGCCACTCCAGACTGCGACAATGTCACCAGCTGAAGCAATTGGCTGTACAGACACGAGGACTTGTCGATGATTTATTCCATAATAAGATTGACATCAGATTTGGATCTATTCAACCATTACTAGAACTATCAGTTTCAAAGATAAATATAACATCATCAAATAATATTAAAGAGGAGTCAGATGAGGATGTGTTTCATACGGACGAAGACAGTGAAGAAGATGAAATTTTAGGAAACACTTTAAATCATGAAGAAGAGGAGAAACCTTACATAAAATCTGAAGACGACGAATCGGCACAGGAAATACCGAATGTAAAAGCGGGATTTCAAAATTCGAAAGATCATGAATTAAAAGTTGTGAAGATAAGTCAAGTAAATGTCGAATATGCCTCTCCAAATATAACACCCAACTTACAAGAACTTTTGGATAGGAAAAAACAGTCATTGGGTGAACAGAGCACGGAAAGTGTAGAAATAAAACAAGAGATAAAATATGAAACAGGAGATAAAGATACAGACCAAAACATCGAGCAAGACAGCACTCATATCCACGAGGAGCAAGAAAACGCAAGTGTAGTGCGAACCGACCGTCGCATGCGGCCACTGAATTGTGAAATATGTCACAAGAACTTTAAATATAATTACCAACTACGTAGTCATCTCAGGATTCATACGGGCGAGAAACCGTTCACCTGTAACATATGTTTAAAGAAATTCACAACTAAGACGAATTTGAAAAGCCATTACATGTTCAGTCACGCGGGTATGAAATATAGCTGCGATATTTGCTCAAAGGAAATCTCAAATGAGTATAATTTGAGGAGGCACAGATTACTTCATTCGGACGAGAAACCGTTTAGCTGTGACGTATGTTCAAAGACTTTCTCGCTGTTGATACAATTGAACAAACATAAACAGATTCACACGGGTGATAAACCTTTCACCTGTGACGTGTGTTCGAAGAAATTCTCTCACCAGTCTCATTTGATCGGCCACAAACGAATACATACTGGCGAGAAACCGTTCAGCTGCGATATTTGCTCACAAAAATTCGCCTACAATTCTAAATTAAAGAGGCACATGCAAACTCACACAGGTCTGTCAGTGGAATCTGAAGATCCCCTCGTTGATACACAGCTTCCAACAAACATAGTGGACGACTCCATATCATTAAAGCGAAGTCAGGGCACCATTGAGGAATACATAAGTTCGATTGGCCCAGTCGATCAGTCAGCATATTTAAATAAGGAATGGGAGGCAGAAATAAAACTGGAGGTGGAGGGGGTTGAAGATCAAAGTACCGAACAAGACTACGAGCTAGACAATACAAACCACGAGAGGCGAGACCACACCAGCGAAACACAGTCCAGCAAGAATCCGCACGGCTGTGACGTTTGTTACAAGAAATTCAAATTCAAGAGTGACTTGCTACGGCATATGCGAATACATAGCAACGTCAAACCATTTGGCTGCGACATTTGTTCAAGAAAGTTTAAAAGTAGGCATTGCTTGCAACGACATATGAGGATACATATAGGAGATCTTCCGTACGGCTGCCAGATTTGTGCAAAGAAATACTTATTTGAGTGTGATCTGCAAAGTCACGTCCGAAGTCATAGAAGTGAAGAACTCAGTACAAGCACCGAAAATAGTTTATATGAAGCCGGCGAAGATAATGTGTGCAATTTTTGTTCTAAAAAGTTCACAAATAAAGGAAGCCTGAATCGACACATCCGAATTCATACAGGCGATAAACCGTTCGTCTGTCATGTTTGCGCGAAGAAATTTATAGAGAAGAGCGCCCTAGATAACCATGTGTTAACACACACGGGCACCAAACCGTTCAGCTGTGATATTTGTTCCAAACGATTCACTTTAAAGCTCAATTTGAAGAGGCACGCAGTGGTTCATACGGCGAAAACGCAGTTTAACTGTGATATATGTACCAAGAAGTTCCGTTTCAAGTCCACTTTGAAGTCCCATAGACGGCTACACGGAGGCGCAAGAATACAGGAACGCAACAAACCGTACAGTTGTGATGTGTGCTCGGAGAAATTTTCGCACCAGAGATATTTGAACGCTCACACTCAAATCCACGCGAGTGACAAAGTGTTTAGTTGTGATTTGTGCCCTAAGAAGTTCCTACGGAAGACCCATTTGAATAGGCACTCTCGATCTCATACAGGCGACCAGCCGTTCACCTGCGATATATGTGCGCGGAAATTCACGCAAAAGGGCAGCTTGAAAGTGCACAAACGCAGTCACGAGGGAGACCGTAAATATAGCTGTCATGTTTGTTCAAAGAAATTCCTAAGAAACTACACCCTGCAGACTCATTTGAAAATTCACGAGGCCCGGGCTACAGTCTTATCTGACAGTCAGACAGATGTAGCCCAACTATAA
- Protein Sequence
- MASSGQALRLETSDSPQVILTWIRDIEFWMCYICHSRLRQCHQLKQLAVQTRGLVDDLFHNKIDIRFGSIQPLLELSVSKINITSSNNIKEESDEDVFHTDEDSEEDEILGNTLNHEEEEKPYIKSEDDESAQEIPNVKAGFQNSKDHELKVVKISQVNVEYASPNITPNLQELLDRKKQSLGEQSTESVEIKQEIKYETGDKDTDQNIEQDSTHIHEEQENASVVRTDRRMRPLNCEICHKNFKYNYQLRSHLRIHTGEKPFTCNICLKKFTTKTNLKSHYMFSHAGMKYSCDICSKEISNEYNLRRHRLLHSDEKPFSCDVCSKTFSLLIQLNKHKQIHTGDKPFTCDVCSKKFSHQSHLIGHKRIHTGEKPFSCDICSQKFAYNSKLKRHMQTHTGLSVESEDPLVDTQLPTNIVDDSISLKRSQGTIEEYISSIGPVDQSAYLNKEWEAEIKLEVEGVEDQSTEQDYELDNTNHERRDHTSETQSSKNPHGCDVCYKKFKFKSDLLRHMRIHSNVKPFGCDICSRKFKSRHCLQRHMRIHIGDLPYGCQICAKKYLFECDLQSHVRSHRSEELSTSTENSLYEAGEDNVCNFCSKKFTNKGSLNRHIRIHTGDKPFVCHVCAKKFIEKSALDNHVLTHTGTKPFSCDICSKRFTLKLNLKRHAVVHTAKTQFNCDICTKKFRFKSTLKSHRRLHGGARIQERNKPYSCDVCSEKFSHQRYLNAHTQIHASDKVFSCDLCPKKFLRKTHLNRHSRSHTGDQPFTCDICARKFTQKGSLKVHKRSHEGDRKYSCHVCSKKFLRNYTLQTHLKIHEARATVLSDSQTDVAQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -