Csei020454.1
Basic Information
- Insect
- Cyaniris semiargus
- Gene Symbol
- -
- Assembly
- GCA_905187585.1
- Location
- LR994549.1:10531504-10535077[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.4e-12 3.5e-09 36.7 0.0 1 38 11 48 11 52 0.93 2 2 3.7e-05 0.014 15.6 0.1 19 37 214 233 201 237 0.89
Sequence Information
- Coding Sequence
- ATGATGACATGCAATAAGAGACAAACGTGGGACAGAGATATCATGTCCGCTGCTGTTATAGCCGTTAGGGAAAAGAGGATGGGATACTTGAAGGCAGCTAAGCACTTCAACGTTCCCAGGTCCACTCTTTATCGTTTGGTCAACGATGGAAAGTCACCTGAAGAATCTGTAAGCAAAGTTCTAGGTCGGAAACCTATTCTAAATTCAAAACTAGAGAACCTTCTGATTGAGCATATAAATTTGCAAGAGGAGCATAAACTGACGAAAATGAATTTACGACGGTTAGCCTATCAACTAGCTGTAGAACACAGTATAAAAAACTCATTCAAAAAAGGCATTGCTGGTAAAGAATACACTTTAGTTGAAGGCAATAGAAAACATCTGCAACTGATGCTCGATGGTTATACATTTAACAAGACGGGTGTGCAGTATTGGTACTGCTCGAAACGCAAGGCTGGCTGTAAAGCAAAGATCAAACTAAATAAAGACGGCAAAATAGATCGCGCCAATAATATCCATGAAAACTTGCCACGATATTTTCTTTATGAACCAACGGATCTTGCACTCCAAAAACGAAAAAAAAATTACGATCCAACATTAATAGAATTGGCAATTGCTGAAGCAATAAAAACTCGTAAAGTAAGACGAACAGCTCGCAAATATGGAATCGCTAAATCAACATTGTACTACAAGATTAAAAATCCTGGTCACAGAACAATTTCTGGACCACCACCTATTTTAACAAATGCTGAAGAAGATAATTTAGAAGAATGGATTTTAGAATTATTGAATAAGGGATTTTCTTTAAAAAGAGAAAATTTGATTGGCAGTGCGCAAAAAATTCTGACCGATAGCCCAAGGCCTAATTGCTTTAAAAATAACTCCCCTGGTCACGGATGGTTCAAAACATTTTTGAGAAGGCATCCAGCGATTAATTACCAAACTAAAAAAGAGGTTATCAACAAAAATTACGACTTGAAACATGATATTAGGAAATGGCTTTCGACAATTCAGGATTACTTAGAAGAAAAAGAATTGTTGAAAGTTTTAGATGAGCCCAACAGAGTTTTTATTGGGGAGGAAAGCCATTTTGTGATCAGTCCTAACAACTCTGTCGATGTTATAAAAAGCTCTAAAGTCACAGACTCTATGGAATCAGTAACTGTCATGTTAGCGTTTGCTGCTGATGGTCAAGGCTGCCCTCCTATGGTTGTTTATAAAAATAACAGGGTTCCACAAAAGGTGGCTCATAAAAAACTGGAAGGTTGGGCTATTGGACAGAGCAAAACTGGTCGCATGACCAGTGAATTATTTTGGGAATATATTTTGAACGTTTTTCATCCGTACTTAATAGAAAAAGAAGTAACTTTTCCAGTTATAATTTTTCTTGACGGTCGCAAAACGAATCTAACGTATGAAGTTACTAAAAAATGTGTGGAGTTGAATATAGAATTAATTGGGCTACATCCTGATGCAAGTACATTTGTGCAGACATCTGATGAGGCAGTGATACATCCAATTACGGCAGCTTGGAAGAAAGCATGTCAAATATGGCTTATGGAAAATCCGAATAAAAAAGTTACAAGAGTTAATTTTGCTGAAGTACTAGATAACGCTCTACAAAATTCCATAGTACCTCAAACTTTAATAAATGGATTTAAAGCGTGTGGCTTAATACCGTTGAATCCAGATGTAGCATTAGATTAG
- Protein Sequence
- MMTCNKRQTWDRDIMSAAVIAVREKRMGYLKAAKHFNVPRSTLYRLVNDGKSPEESVSKVLGRKPILNSKLENLLIEHINLQEEHKLTKMNLRRLAYQLAVEHSIKNSFKKGIAGKEYTLVEGNRKHLQLMLDGYTFNKTGVQYWYCSKRKAGCKAKIKLNKDGKIDRANNIHENLPRYFLYEPTDLALQKRKKNYDPTLIELAIAEAIKTRKVRRTARKYGIAKSTLYYKIKNPGHRTISGPPPILTNAEEDNLEEWILELLNKGFSLKRENLIGSAQKILTDSPRPNCFKNNSPGHGWFKTFLRRHPAINYQTKKEVINKNYDLKHDIRKWLSTIQDYLEEKELLKVLDEPNRVFIGEESHFVISPNNSVDVIKSSKVTDSMESVTVMLAFAADGQGCPPMVVYKNNRVPQKVAHKKLEGWAIGQSKTGRMTSELFWEYILNVFHPYLIEKEVTFPVIIFLDGRKTNLTYEVTKKCVELNIELIGLHPDASTFVQTSDEAVIHPITAAWKKACQIWLMENPNKKVTRVNFAEVLDNALQNSIVPQTLINGFKACGLIPLNPDVALD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -