Csei012406.1
Basic Information
- Insect
- Cyaniris semiargus
- Gene Symbol
- -
- Assembly
- GCA_905187585.1
- Location
- LR994560.1:782163-794275[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.4e-09 1.6e-06 28.1 0.0 2 39 127 165 126 169 0.90 2 4 5.9e-11 2.2e-08 34.1 0.1 1 39 180 218 180 221 0.94 3 4 2.8e-14 1e-11 44.8 0.3 2 45 236 279 235 279 0.96 4 4 8.3e-17 3.1e-14 52.8 0.0 2 40 287 326 286 328 0.93
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGATTTTAAATCGATTAAATGCGAGCCAACGACGGAAGATGATATTAGCCAGGGTACCCTGGAAGAGCTAGCGCCAGCGCCGGCGGGGCCCGCCGCGACGCCGGTGGAGGAGCACCTCCCATCACCAACTGAAGCGTCGCTGGCGACCCTCCAACCTGCACCTCTAGGAAATACGATGGGAAGTTCAATAATCGACATGCACGCGAAGATGATGAGCGCGACGGAGGTGGCTGGCTCCGGGGACTTCGTGCCGCTCATGCCGGTCAAGGATGACCTTTCCGAGAGTGAGCAGCAACAGAGCAGCGACGACACCAGCGACTCCGCCCCGGAGCAGGCGGTGGGCCGCGGGAGCCCCAAGGCGTGGTCGCCGCAGGACATGGACAGCGCGCTCGACGCGCTGAGGACACACAACATGACTCTCACTAAGGCATCAGCGACTTTCGGCATCCCGTCAACAACGCTATGGCAGCGCGCGCACCGCCTCGGCATAGACACGCCGAAGAAAGATGGCGCCTCCAAATCCTGGAGCGAGGATGACCTGAAGGGGGCGCTGGACGCTCTACGGGCCGGCACCATCTCCGCTAATAAAGCTAGCAAAGCTTATGGCATCCCCAGCAGCACTCTGTACAAGATAGCGCGGCGCGAGGGCATCCGTCTGGCGGCGCCGTTCAACGCCGCGCCCACCGCGTGGCGGCGCGCCGACCTCGCGCGCGCGCTCGCCGCCGTGCGTGCGGGCGCCGCCGTGCAACGTGCCGCGTCGCACTATGGGATACCCACAGGGACTCTATACGGACGGTGCAAGCGAGAGGGTATAGAGCTGTCCCGCTCTAACCCGACGCCGTGGTCGGAAGGCGCTATGGAGGAGGCGTTGGAAGCTGTCAGGGTGGGTCAGATGTCGATTAACCAGGCGGCCATCCACTTCAACCTGCCGTACTCGTCGCTCTACGGCCGCTTCAAGCGCTGCAAGATCCAGCCGCCGCAGGGCATCCAACCTTCAAGTCACATGGAGTTCTCTGACCAGATGGATCATCAGTTCTCTCCGGACATGATATCCGGTTTGGACGACATACACCGGACATATACCCTGGCGGATGTCCTAGATGTACAGTCGTGCACACAAGAGTCAAACGATGAGTACACTGTACAGCCGCGAACACAAGCGGAACATTTACAGCTTGTATCGTATGTACAGTCGCGATCACCAGACGCCATAGATAAAAGGCAGGTCCAACAAGAGGTACAGTCGAACACTGAGCTGCAATCTGCACATGCACCTGTACAATCACGACCACAAGCGGAGCTAGGATCGTATGTACAGACGCGAACACTCGAATCCGTAGATATGCGACGAGACGTTCAGCGAGAACTTCAGTCGAGCGAAGGACGTCTACAAATAGCGCAGGCGCCTGTACATTCGCGACCACAAGTATATTCACTAGTCAACTCGTACGTACAGTCGCGAACGACTATTGAGTCCATTGACAAGCGACATGACGAGCAGGTACAGTCGGGTGCAGAAGTGCGGGCGTTTAGCGGCGTGCGTCATGCTCTGTACGCGCTCGAGCCGTGCGGCCCCGCCTACTGCGTCGCCAGCTGA
- Protein Sequence
- MPGHDFKSIKCEPTTEDDISQGTLEELAPAPAGPAATPVEEHLPSPTEASLATLQPAPLGNTMGSSIIDMHAKMMSATEVAGSGDFVPLMPVKDDLSESEQQQSSDDTSDSAPEQAVGRGSPKAWSPQDMDSALDALRTHNMTLTKASATFGIPSTTLWQRAHRLGIDTPKKDGASKSWSEDDLKGALDALRAGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLARALAAVRAGAAVQRAASHYGIPTGTLYGRCKREGIELSRSNPTPWSEGAMEEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKIQPPQGIQPSSHMEFSDQMDHQFSPDMISGLDDIHRTYTLADVLDVQSCTQESNDEYTVQPRTQAEHLQLVSYVQSRSPDAIDKRQVQQEVQSNTELQSAHAPVQSRPQAELGSYVQTRTLESVDMRRDVQRELQSSEGRLQIAQAPVHSRPQVYSLVNSYVQSRTTIESIDKRHDEQVQSGAEVRAFSGVRHALYALEPCGPAYCVAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00164245;
- 90% Identity
- iTF_00164245;
- 80% Identity
- -