Cbre006451.1
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- nfxl1
- Assembly
- GCA_036172545.2
- Location
- CM070086.1:14748064-14751410[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.96 4.9e+03 -2.5 1.3 14 19 120 125 120 125 0.84 2 14 0.16 8.3e+02 -0.1 0.4 4 10 156 162 155 162 0.94 3 14 6.8e-05 0.35 10.7 13.6 3 19 169 185 167 185 0.95 4 14 0.0014 7.1 6.6 12.7 1 19 221 237 221 237 0.95 5 14 1.6 8e+03 -3.2 1.4 5 10 261 266 261 266 0.93 6 14 7e-08 0.00036 20.3 15.6 1 19 272 290 272 290 0.98 7 14 1.1 5.5e+03 -2.7 0.8 6 10 315 319 314 320 0.86 8 14 3.2e-08 0.00017 21.3 14.8 1 19 325 343 325 343 0.98 9 14 0.49 2.5e+03 -1.6 7.5 3 12 379 388 377 389 0.86 10 14 1.6 8.5e+03 -3.3 1.7 6 10 396 400 396 400 0.93 11 14 1.8 9.1e+03 -3.4 0.6 6 10 455 459 454 460 0.58 12 14 0.0003 1.6 8.7 6.3 1 12 465 476 465 476 0.96 13 14 0.0094 49 3.9 13.1 3 18 505 520 504 521 0.93 14 14 1.9 9.6e+03 -3.5 1.4 8 13 526 531 525 531 0.73
Sequence Information
- Coding Sequence
- atggctAGCAAAACCAAAACCaaaattaatggaacatcaaAGACAGCAAAAAATCAACCGGAATCGCGACACGTAGCAAATGGTTACGAAAGCAACAACAATTCTTACAAAGAATCCATCGAGTCCTTAACGAACGCTTTTCTCTGCGGAAGTGTTTGCTTGATTTGCATTTCAAAGATCAAAAGAGCTGACAGAATTTGGTCCTGCACAAATTGTTACAACTTTTTCCATCTAAACTGCATCCAAAGATGGGGCAACGACAGcgttttgcagaaaaaacgaTTCAAGGAGACCGACGAAGGGTACTACAACTCTGCCGGGCAATACATCCCAAAAGATGAAAGTCCCCTGGAATGGAATTGTCCCAAATGTCGCGAGTCTTATGCCTCATCAGAGATTCCACGAGACTATTTTTGCTTTTGCGCGAAACAAATCGAGCCGGAATACCAAGAATGGATTTTGCCCCATAGTTGCGGAAatgtttgcatgaaaaaactgGGATGCCAACACAAGTGTTTGTTACTTTGCCATCCTGCCAGTTGCCCGCCGTGCCCTCAGACGATCACAGTTTCTTGCGAATGCGGCAAATCTCCGCTAAAAACAATTCgatgtttcgaaaaaaagtgGAATTGTTTCAAGGCGTGCGGAAAAAAACTCGAATGTGGGCATTTTTGTGAGGATTTGTGTCACGAAACGTGTCCGCCGTGCACCAAAACGCGAGTCCAAACGTGTTCGTGTGGAAATAAAACCGAAAAACTTCCGTGTTTCAAAGGAACATTAAAATGCACGaaaatttgtgacaaaaattacaGCTGTGGCGttcataaatgcaaaaaaatctgTTGCGACGGGAATTGTGGACCTTGTAGCGTGGGACTTTCCATGACGTGTCCTTGTGGAAAGCAAAAATTCACTGGAAGttgtgaaaattcaaaaatttcgtgtGAAGATACTTGCGAGAAAGTTCTGGATTGCGGATCGCATAAATGCATTTCTCAATGTCATGCTGGTCCGTGTCCCGAATGCCAAATTATTGTACCGAAGCCATGTCGATGTGGGTTGTTTACCAAGGAAATTGCTTGTTCGAAGGCGTTTTTTTGCGAAACAAAGTGCAAAAGGTTGAGGACATGCAAAAAGCAtgcttgtaataaaaaatgttgtccCAACGATGATCATGAGACGATTTGCGAAAAACCATGCGGGAAATTGTTATCTTGTGCCGAGCTGCCTGGAGAGTACGCCGTCGAACGAgttgaattcaaaaaactcGATCATCCAAAATGTCAAGCAAAAGTTCCCGTTGGTTGCATAGGAGGGCATGAAACAGCTTTATGGCCTTGTTGGAATTCAAAACCGACATCATGTGGTCGTCCTTGTGGAAGAAAACTTTCTTGCAGCAATCATAAATGTGACAAGGAATGTCATTCGGTGAAAGATGTGAATTTGTGGGAGCAAGATGAAAATTGTGCGAAATGTGATCGTGGCTGTGAAAAGAAAAGACCTGATGGATGTACACAtcCTTGCAACCAAAGTTGTCACGTAAAAGAATGCAAACCATGCATTGCAACAATCAAAGCCAAATGTCACTGTGGTCTGACTTTGCTAGTTTTCAAGTGTTCTGATTTCAACATGGATCTCGATGAAAATTCGATGcaacaaaaaagacaaaaaattttatcatgtgGAAACCGTTGtccaaaaaattaCGATGTGGTCATCAATGTCCTCATTGCCATGAAGGAGAATGTCCAAATGCAGATTCCtgtaaaaagaagaagaaaatgtacTGCAAATGCAAAAATCGTAAAGCAGATATTTCctgtgaaaaaataa
- Protein Sequence
- MASKTKTKINGTSKTAKNQPESRHVANGYESNNNSYKESIESLTNAFLCGSVCLICISKIKRADRIWSCTNCYNFFHLNCIQRWGNDSVLQKKRFKETDEGYYNSAGQYIPKDESPLEWNCPKCRESYASSEIPRDYFCFCAKQIEPEYQEWILPHSCGNVCMKKLGCQHKCLLLCHPASCPPCPQTITVSCECGKSPLKTIRCFEKKWNCFKACGKKLECGHFCEDLCHETCPPCTKTRVQTCSCGNKTEKLPCFKGTLKCTKICDKNYSCGVHKCKKICCDGNCGPCSVGLSMTCPCGKQKFTGSCENSKISCEDTCEKVLDCGSHKCISQCHAGPCPECQIIVPKPCRCGLFTKEIACSKAFFCETKCKRLRTCKKHACNKKCCPNDDHETICEKPCGKLLSCAELPGEYAVERVEFKKLDHPKCQAKVPVGCIGGHETALWPCWNSKPTSCGRPCGRKLSCSNHKCDKECHSVKDVNLWEQDENCAKCDRGCEKKRPDGCTHPCNQSCHVKECKPCIATIKAKCHCGLTLLVFKCSDFNMDLDENSMQQKRQKILSCGNRCPKNYDVVINVLIAMKENVQMQIPVKRRRKCTANAKIVKQIFPVKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -