Cbre001297.1
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- stc
- Assembly
- GCA_036172545.2
- Location
- CM070085.1:13734320-13737948[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2.5 1.3e+04 -3.9 1.1 15 18 333 336 332 337 0.81 2 16 0.57 2.9e+03 -1.8 0.2 4 10 366 372 366 374 0.91 3 16 3.3e-07 0.0017 18.1 10.4 2 19 379 396 379 396 0.95 4 16 0.00013 0.67 9.8 12.2 3 19 434 450 432 450 0.92 5 16 2 1e+04 -3.6 1.1 6 10 480 484 479 484 0.87 6 16 8.4e-10 4.3e-06 26.4 14.7 1 19 490 508 490 508 0.97 7 16 5.8e-06 0.03 14.1 11.7 4 19 556 571 549 571 0.87 8 16 0.11 5.8e+02 0.4 9.0 1 11 611 621 611 621 0.91 9 16 0.91 4.7e+03 -2.5 0.6 4 10 626 632 625 632 0.92 10 16 3.2e-10 1.6e-06 27.8 13.6 1 18 638 655 638 656 0.97 11 16 1.9 9.5e+03 -3.4 2.6 6 10 685 689 684 696 0.66 12 16 3 1.5e+04 -8.2 10.9 10 18 703 712 692 713 0.75 13 16 2.8 1.5e+04 -4.0 0.5 9 12 731 734 731 734 0.77 14 16 1.5e-05 0.077 12.8 6.5 1 12 749 760 749 761 0.97 15 16 2.9e-05 0.15 11.9 11.5 1 17 782 799 782 801 0.88 16 16 1.1 5.6e+03 -2.7 0.0 8 12 817 821 816 821 0.81
Sequence Information
- Coding Sequence
- ATGGAGGGCTTTCAGCGTCTCAATTTGGCGGATCACCAACAAAACAACTACGTGCCCTTTGACCAATTCATTCAGCAACATTATGCAATGCCGATGGCTGCGGGTCCCTCGACATCCGTTCTGACGGCAAATGCGGCAGAATTTGTGCCAAATAATCGACGCGAACAACAATATTTGCCTGCAACGAGCACGAATGCGACAACAAATGgtcaaaattatcaatttcaacaaaattatcCGCAAACAACGATGACAGAGGAAAAATATAAAGGGGCGATACGTAAGCAGTACAACAATCAAGGCGGCAGAAATTACTATCAGAACAATTCGCGGCACGGAAATCGAcgtttttacaataataatggaaCGGATCACGGCACAAACGGGTATAATGGAAGAGAAAATCATAATTGGAAGCGGAGAGATGATTTTAGGAGGCAAGGAGAAGAAAATCGAAGAAATGGGGAAGAGAATCGAAGACAAGGAGACGACTATCGAAGACAAAAGGATGATTTTAGGAGAcaagaaaatgattttaaaagacAAGAAGATGAAAATCAACGACAAAGGGAAGACAATCGAAGACAAGGAGACGAAAATCGTAgaaatttcgatgaaaatcgAAGAAATGGTTCACAACAAGACCTTtcacacaaagaaaaaagtcgTCAAAATACCAGAGAAGACCATCACCGCGTGAAAAATGATGAGTCACGAAGACCGAGGAATCATGACAATAACGGGCGATACAATAAACATTACTCCAAAGGAGCTTCTCAGAAAAAATCTCCGCCAAAGATAACATTTGACGCTTCGAATTGCTCCCAAcgcgaaaaattaacaaaagaaaTGGAAAATTCCGTTCTCGAGTGCATGATTTGTTGCGAGAACATCAAATCCACACAATCGGTCTTCTCCTGCAACGCCTGTTTCCACATTTTTCATCTTAATTGCGTCAAAAAATGGGCAAATAGCAGTTTTGCCGAAGGTTGGCGATGTCCCGCCTGCAATTCCTTCAAAGAAACCCTTCCAAAGGACTACTACTGCTTCTGTGGCAAACTCAAGGATCCTCAGTACAATCGAAACGACACGCCACACAGTTGCGGCGAAATGTGCGGACGTAGTTGCGAGCAAGGCGACCACAAATGCACTTTATTGTGCCATCCAGGCCCGTGCGAGCAATGCCAAGCGACAATCACGCGTTACTGTCACTGCCAAAAGTCCTCCAAGATGATGCAATGTTACCAAAAGGAAGAAATTGTGTGCGACGAAACGTGCAATCAGCTCCTTAACTGCCTGACGCACACTTGCACGCGAAAGTGTCACAGTGATCCGTGCGGCGAATGCACCGCCGTCATCGAACACATTTGTTATTgcgaaaaatcacacaaaaccGTCCCCTGTACGCCCGCCAATAACGAGACGAAGACTTTTCAATGCCAAAATATCTGTGATCGGATGCTTGGTTGTGGCAATCACACGTGCAAGGAGCTTTGTCATGTCGGCCCGTGCGGCGAATGTCAATTATTgccgaaatttatcaaaacttgTAACTGTGGAAAGGAAGAATTGCCCGCAGATTTGAGGAAATCCTGCTTGGATGAGGTTCCGGTGTGCAAAAATGTGTGTAAAAAGGTGCTAAAGTGCGGGACACAGGCGAATCCACATTTCTGTACGAGCAAGTGTCATGTTGGGGAATGCCCGCCATGCAAAAAAAGCACGAAGGTGAGATGTCGTTGTGGGCACATGGATCAGGAAGTGAAATGTAAGACGTTAGTTAATGGCACAGATGACGTCACATGCAGCAAAAGATGTACAAAACTGAAGAGTTGTGGTAGGCATAAGTGTAATACGGATTGTTGCATCGATTTTGATCACCAATGTTTGCTagtttgtaataaaaagttgaCTTGCGGGAAGCAtcgttGCGAAGAAATGTGTCACAAAGGTCCATGTCGCCCATGCCTAATATCCTCTTTCGATGAGTTATTCTGCGAATGTGGAGCTAATGTCATCTACCCGCCCGTGCCGTGTGGCACAAAGAAGCCCGCTTGTGAGAAACCATGTCCCCGAAGTCATCCTTGCGAACATCCCGTCTTGCATAATTGTCATACGGCAGCGAAATGTCCTCCGTGTGTCATTCAAACCACGAAATATTGTTACGGAAAGCATGAACAACGCAAAACCATCCCATGCCACGAAGAATCCTTTTCATGCGGCATGCCATGCGGAAAAAGTCTCAGCTGCGGTCGTCACAAGTGCCTTAAGGTCTGTCACAAAGAAGAAATGTGTCTGAAGGAGGGCGACATTTGCAAGCAACGCTGTAATCGCGCACGTCTCGATTGCGGGCATCAATGCGGCGCTGCCTGTCACGACGGCGAATGTCCCGACATCATTTGCAAGGAAAACGTCGAAATCACCTGCGAATGCGGCAATCGCAAACAAATGCGCATTTGTCACGATTTGTCGCGCGAATATCGTCGCATCGCAAATGCGCAACTCGCTACCTCAATGATGGACATCCAGAACGGAGGCGCCGTCAAATTGAGTGAGATTTTAGGTCCCATCAAAAAGGGCAGCAACAAGACACTCGAATGCAATGACGAGTGCAAACTCCTCGAACGCAACAAACGACTGGAAATGGCTTTTGGTCCGTCGACGGAAAACACGAAACTCGCTCCAGCTTATACGGAATTCCTCAAAACTTATGCGAAAAAGGACATGGCTTTGGTGAAGGATATTCACATGAAACTAAcaaatttggtaaaattagCGAAAGACAGCAAGCAAAAGTCGCGAAGTCACTCGTTTCCGGTCATGAATCGCGAAAAAAGACAAGTTGTGCATGAGATGTGCGAAGCTTTCGGGATTCAAAGTCAAGCTTTTGACGCTGATCCAAATCGAAATGTTGTTGCAACGGCAAATAAGGACATGtgttTTTGTCCAACGATGAGCGTAATGGAGGTGTTACAACGTGAATCGGGCCAACGAGTACGAATTCCAGTCTCGCAAAGTGCCTGGAGATTACCTTCGGCTAAATAA
- Protein Sequence
- MEGFQRLNLADHQQNNYVPFDQFIQQHYAMPMAAGPSTSVLTANAAEFVPNNRREQQYLPATSTNATTNGQNYQFQQNYPQTTMTEEKYKGAIRKQYNNQGGRNYYQNNSRHGNRRFYNNNGTDHGTNGYNGRENHNWKRRDDFRRQGEENRRNGEENRRQGDDYRRQKDDFRRQENDFKRQEDENQRQREDNRRQGDENRRNFDENRRNGSQQDLSHKEKSRQNTREDHHRVKNDESRRPRNHDNNGRYNKHYSKGASQKKSPPKITFDASNCSQREKLTKEMENSVLECMICCENIKSTQSVFSCNACFHIFHLNCVKKWANSSFAEGWRCPACNSFKETLPKDYYCFCGKLKDPQYNRNDTPHSCGEMCGRSCEQGDHKCTLLCHPGPCEQCQATITRYCHCQKSSKMMQCYQKEEIVCDETCNQLLNCLTHTCTRKCHSDPCGECTAVIEHICYCEKSHKTVPCTPANNETKTFQCQNICDRMLGCGNHTCKELCHVGPCGECQLLPKFIKTCNCGKEELPADLRKSCLDEVPVCKNVCKKVLKCGTQANPHFCTSKCHVGECPPCKKSTKVRCRCGHMDQEVKCKTLVNGTDDVTCSKRCTKLKSCGRHKCNTDCCIDFDHQCLLVCNKKLTCGKHRCEEMCHKGPCRPCLISSFDELFCECGANVIYPPVPCGTKKPACEKPCPRSHPCEHPVLHNCHTAAKCPPCVIQTTKYCYGKHEQRKTIPCHEESFSCGMPCGKSLSCGRHKCLKVCHKEEMCLKEGDICKQRCNRARLDCGHQCGAACHDGECPDIICKENVEITCECGNRKQMRICHDLSREYRRIANAQLATSMMDIQNGGAVKLSEILGPIKKGSNKTLECNDECKLLERNKRLEMAFGPSTENTKLAPAYTEFLKTYAKKDMALVKDIHMKLTNLVKLAKDSKQKSRSHSFPVMNREKRQVVHEMCEAFGIQSQAFDADPNRNVVATANKDMCFCPTMSVMEVLQRESGQRVRIPVSQSAWRLPSAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -