Cbre009760.1
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- -
- Assembly
- GCA_036172545.2
- Location
- CM070086.1:40821705-40825284[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0023 0.086 13.1 5.5 1 23 22 45 22 45 0.91 2 18 0.049 1.9 8.9 0.8 1 20 75 94 75 96 0.91 3 18 0.29 11 6.5 0.9 1 23 116 139 116 139 0.97 4 18 0.001 0.039 14.2 1.4 2 23 149 169 148 169 0.97 5 18 5.7 2.2e+02 2.4 0.9 1 23 217 242 217 242 0.89 6 18 0.016 0.61 10.5 0.1 3 20 277 294 276 296 0.93 7 18 0.014 0.53 10.7 1.9 2 23 312 334 311 334 0.94 8 18 5.4e-05 0.0021 18.2 0.1 1 19 372 390 372 393 0.95 9 18 0.17 6.4 7.3 1.0 1 23 572 595 572 595 0.86 10 18 0.0021 0.079 13.3 0.8 2 23 601 621 600 621 0.97 11 18 0.091 3.5 8.1 0.3 1 23 625 648 625 648 0.96 12 18 0.068 2.6 8.5 3.6 2 23 680 702 679 702 0.95 13 18 0.2 7.5 7.0 0.2 3 23 709 728 707 728 0.95 14 18 0.0017 0.063 13.6 0.4 1 20 736 755 736 757 0.93 15 18 0.11 4.2 7.8 4.6 1 23 769 792 769 792 0.94 16 18 0.25 9.6 6.7 0.3 3 23 824 846 822 846 0.85 17 18 0.058 2.2 8.7 0.1 2 23 877 897 876 897 0.96 18 18 1.3 48 4.5 0.6 1 22 901 924 901 924 0.94
Sequence Information
- Coding Sequence
- ATGGATGACAAGCAAAAAACTCCAACATTGGGCGAAATTACTCCGCAATCCATAATCCGCCCGTTCATTTGTCATTATTGCGGCATGAAATTCGACGAGAAAACCCATTTGCGGCAACACATCGGGCATCGTCACATGCCCCGGGATCGAAAATGCCCCGATTGTGATGTCATGATAAACGATATATGTTACATTTCGCACAAACAGGTTCACATGAAGCGGCATATTTGCGAAAAATGCGGGAAATTGTTTCAAACAGCGAAGCGGTTGGAGGTTCACAAGAGCAAATCGTGCCCGAAAACGAAGGAAGAGCTCGAAAAAGACCCCGAATTCATGGCAAAACGGTACAAATGTCACATGTGCATTTATCGCGGACCCAATGAGAGAGCCTTGAACAAGCACGTACAACGCGTTCATCAAGCAAAAAACATGGAAAAGGAGAAAACGTGCgaagtttgtcaaaaaaagttcaataaaatcgCTTATACGAACCACATTCGCACGCATGGCAAAATCCAAtgtcaaatttgtcaaaaattcctCTCCGCTGGCTCGGGATTCTTCAAGCAGCACATGTTAAATCACGAAAAGGAGCAAGAAGACGCCGGATCACAAAGTCACGAAATCGCTTTGGGACCTGATGGAGTGTTTCGATGTTATGCTGAGGCCTGTGACTATGAAACGCCCAAAAAACGACTTTTTGTGAGACATTATCAGAACAAACATGGcccaaaattacttaaatgtGACTTCCCCGAATGCAAAAATACGGAATTGATGAGCGAAAAGCAACTTTGGCGTCATAAAAACTCTCATAAAAGGAAAGATTGTGAAAAATGTGGCGccattttcaatgaattacGTGATTTGAGAAGACATTTAGCAAAAGCCTTATGTAACATGACAAAAGACTCGCAACCCTTTGAGGACCTAAAATGCGAACAATGCGATTATACGACTTACCAATCGAATGCCTTGGTTCGACATCGATTGCATTATCACGCGCCTGTTGTTGGCAGATGTCAAGTGCCGGGATGCAAAAATCCTGAACTCATGACAAAAGCAAAGCTGGCAATTCATATGGGGAGACACAAAGAgcataaaaagaagaaatacgAGTGCGAGATTTGCGGATGGCGTTTCGGAAGTAGTTGGAATCTGAAAAAACATTCAGAGCGTTGCgagtataaacaaaaattggaaaaagaaatgaacgaaaaagttGAAGTTAAGGAAGaaccaaaagaagaaaatgataaaaacgattcagaagaggaagaaaatgaatttaataacaattttgagACCgaaattcagataaaaattgaacctcCAGAAGAAATTCCCGAAAATCCGcttgaaacttttcaaattgacATCAAAGAAGAGCCCCCGCTTGAAATTAACGAAGAATACGAAACGAAATCTATCAAAAGCGAATGTGATAGTAATGTCGATGATCCATTCCAATCAAGTTCGGATGAAGTAAAAACAATTACAGACCCATTGAGTCTCGTTAAATGTCGCGAATGTAAGGAattccgCCTTACTCAACATGTGAAACGACGCCATCCAGAAATGCCAAATATAGAAGATACCAAAGATTTCCTCGCTCTAACGGATGAGCAACTTACGTGTCGTCAATGTGAACGTGAGTGCCTCGACATCTTCGATTATCGGAATCATCTGAGGGAAGCTCATGCCCAAATCGAGTACAAATGCGATAAATGCGACTACGTCtcggataaaaaaaagaatttgggCTTTCATATTTACATGGTGCATGATCCAAATCAAGTTGAATGCGAAATTTGCAGCAAAAAAGTCAATTCAACCCTTCTTACGAAGCATATGAAGAGACATACTTTGCCCCATAAATGCAGTGCATGCCCCGAACGTTTCAGCGGAAGATGGATTTTGAAAGCACACATCCTGAAATGGCATCCAAATCGAGAAGATCTCATCGCAGCCTTGAATGAAgacataaaaagtaataaaaattcacgaaaaattgaagtttctgAAGCGAAACCGATTCAATGTGACCATTGCAATTACAAAACCGCGAATCGTGTgagttttttcaaacatttccaACGAATGCATTCGCTTGACAGAGTAAATTGCGAAATTTGTGGCAATTCTGTGAGTCGAATTGACTTGAAACGTCACAATTTGACGCACGAAAACCCTTCAACGAAGAATTTCATGTGCGAAAGATGCAGTCGAACCTTTAAGCAAGAACGTTCGTTGGAAGTTCATCGAATTTCGTGCATCGGGCAAGTTCAATTCAAACTAAGCAATCACAAATGTGATCAATGCGATCACACAACAGGCACGAAAAAAGGTCTTCGAAACCACAAATACAGCGTTCATGCTCCGAAAGACGCACAATGTCccgtttgtcaaaaatggatgacaaaaatgaaactttcgGGTCACATGAGATGCCACGTAAAAAGAATCGCCTGCGtgatttgtgaaaaatctaatttcGCAACAAGTTGGCATCTTAAAGTTCATATTTTGAAAGTCCATCCAGGTAACGAACATAAAATAATCGAAGAAGGATTGATAAAAAAGCCTCGGAAAATTGTGACAGCTGAAGGAATAATTTACAACAAAGTCGAATGTCCCGAATGTAAAAAGATGGTTCGCGAAACGAGATTAAGTGTTCATATGATGATCCATAATAAGAGATTTTCGTGCCCGAATGAAGGATGCGAATCAATGTTTGCACATCAGTGTGCCATAAAAACTCATTTATTAACGTGTAGGAAACGACAAAGGGATCCTGAAGAAGTTAACAAGAGGAAAAGGAAaagcaatgaaaaaattgaaggaaattttgatgAGACGTCAAGTACAAATCAAAATTAG
- Protein Sequence
- MDDKQKTPTLGEITPQSIIRPFICHYCGMKFDEKTHLRQHIGHRHMPRDRKCPDCDVMINDICYISHKQVHMKRHICEKCGKLFQTAKRLEVHKSKSCPKTKEELEKDPEFMAKRYKCHMCIYRGPNERALNKHVQRVHQAKNMEKEKTCEVCQKKFNKIAYTNHIRTHGKIQCQICQKFLSAGSGFFKQHMLNHEKEQEDAGSQSHEIALGPDGVFRCYAEACDYETPKKRLFVRHYQNKHGPKLLKCDFPECKNTELMSEKQLWRHKNSHKRKDCEKCGAIFNELRDLRRHLAKALCNMTKDSQPFEDLKCEQCDYTTYQSNALVRHRLHYHAPVVGRCQVPGCKNPELMTKAKLAIHMGRHKEHKKKKYECEICGWRFGSSWNLKKHSERCEYKQKLEKEMNEKVEVKEEPKEENDKNDSEEEENEFNNNFETEIQIKIEPPEEIPENPLETFQIDIKEEPPLEINEEYETKSIKSECDSNVDDPFQSSSDEVKTITDPLSLVKCRECKEFRLTQHVKRRHPEMPNIEDTKDFLALTDEQLTCRQCERECLDIFDYRNHLREAHAQIEYKCDKCDYVSDKKKNLGFHIYMVHDPNQVECEICSKKVNSTLLTKHMKRHTLPHKCSACPERFSGRWILKAHILKWHPNREDLIAALNEDIKSNKNSRKIEVSEAKPIQCDHCNYKTANRVSFFKHFQRMHSLDRVNCEICGNSVSRIDLKRHNLTHENPSTKNFMCERCSRTFKQERSLEVHRISCIGQVQFKLSNHKCDQCDHTTGTKKGLRNHKYSVHAPKDAQCPVCQKWMTKMKLSGHMRCHVKRIACVICEKSNFATSWHLKVHILKVHPGNEHKIIEEGLIKKPRKIVTAEGIIYNKVECPECKKMVRETRLSVHMMIHNKRFSCPNEGCESMFAHQCAIKTHLLTCRKRQRDPEEVNKRKRKSNEKIEGNFDETSSTNQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -