Cbre004567.2
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- -
- Assembly
- GCA_036172545.2
- Location
- CM070085.1:43257843-43262965[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.037 1.4 9.3 1.1 1 23 401 424 401 424 0.96 2 12 4.6 1.7e+02 2.7 0.8 2 23 511 534 511 534 0.75 3 12 0.59 22 5.5 0.8 2 19 543 560 543 562 0.89 4 12 0.073 2.8 8.4 0.7 3 23 575 596 574 596 0.97 5 12 0.0013 0.049 13.9 1.1 1 23 605 627 605 627 0.98 6 12 0.023 0.88 10.0 1.3 1 23 633 656 633 656 0.97 7 12 1.9 72 3.9 0.1 1 23 663 688 663 688 0.90 8 12 0.37 14 6.2 2.9 2 23 697 718 696 718 0.95 9 12 0.0082 0.31 11.4 0.3 1 23 727 749 727 749 0.92 10 12 0.00016 0.0062 16.7 4.1 1 23 757 779 757 779 0.98 11 12 5.5e-07 2.1e-05 24.5 0.5 1 23 785 807 785 807 0.98 12 12 5.9e-06 0.00022 21.3 2.7 1 23 812 834 812 834 0.98
Sequence Information
- Coding Sequence
- atgctCCTTAAAGTATCTCTCGTCTTGTTCTTTGGGATTTTCGTCGATGCCCAAGACTTGTGTTCGGGTCCCAACGAAGCATGGAACGACTGTGGCTCGTATTGCAACCAAAAATGTGgcgaaattgaacttttttgcgAATTTGAATGCACTCCGGATTGTTTTTGCGTTGAAGGTCATCGTCGAAACAGCCTAAATATTTGCGTTCCCGAAGAAGAATGTGACGTTCGTCCTCAAATAAGTGCAAAAACTTGCTCCGGCATCAACGAATTCTACACAAATTGCGGCAATAACTGCACCGATCAATGTCACAGCAACGAAAAAACGTGTCGCGATACCGAATGTCAAGCTGGATGTTTTTGCAGGAACGGTTACAAGCGAAATTCGGCAGGAATTTGTGTGCCGCCCAAACAATGTTTCTGCAATGACGAGACAGAAGAGTACAAAGCAGGTGATCGTTGTTGCGAATCttgtgaacaaattttttgcacccaaaaatacgaaattggATGTTTTTGTAAAGCAGGCTTGAAACGAGATCCGAAGACGGGAAAATGCGTTTTGCCCGAAAAATGTCCCAAAAGTATCGTTGCGACGTTGTATTGCAAGGAAAATGAAGAGTTGAAGTGCAGCAACAAGTGTTTGGAGTTGCCTAAAGACGAACAGGGAGAAGGATGTACGAAGGAATGTTACTATGATTGTTTTTGCAAAGAAGGGTTTGTGCGAGATTCGAAGACGAAAAAATGTGTTGTTCCGAAAAAACATGAagAACAAGAATGGGAAGAACCGCACATCGTGATCAAAGAAGAACCTTTTCTCGGAACAGAAACAAAAGCTGAAAGTCACGTAATTTATCCCGGAATCGCTTATCAACTCCCAGCAGACCTTCCATTGCCTCCTTTGGACAACATCAAGGCGCCATTCTTCGCGGAAATGACAAATTCTGACGGAAGCAAGTTTTACATCgaacaaaaagacaaaaaatctgaaatttttgtcacgaATTACGATCCCCGAGTgactttttgtgacatttgcaGCTTTGAAGTATCAAAAATCGAACAAATCCCGCAACATCGTCAAgggcatttttttacaaaaaccgAAAATGGCATTTGTCGAGGCTGTGGATACAAATTTGGAGTCGAGGAACAGTCGAATCACACATTTTTCTGCagcaaaaaagatgaaattcaagaatttatttGCACCGAATGTGATTTTGAGGCGAAAGACTGTCGAAAATTACGAGCGCATGTTCAACGAGTACATCGTCAATCCgaggaaaatgaatttttggagGAAATTCAACCtgtaacgaagaaaaaagttaaaaaagttgGAGGAAAGGATGCGGCAATTGATGAATATTTGTCGTATTTGAGCTTACCTGAGAATTGTGTGCTGccaaatttgtataaattgaGTGCTCAGCATAGTCGGATGCATCCACAGCCCGATGGAACGAGCATTTATGTTGGAAAAGGCACGAATCATCTTCAGgTAATGAATTTCGATCCTCGTCGCGAAAAATGTGAACTTTGCGGCAAATCTCAGCTGAAAAACAAGCCAGATTTGATCGCCCATCGTTTCAAGGAGCATTTCTTCCCTTCATTTGCCGGTAACGAGTGTCAAGGATGTCACAAAGAATTCCAAACTGCCGAATCTAAAATCGCCCATAGtcatttttgcatcaaaaaatcccaaattCCCGTGAATTTCTGTCGAAAATGCAACGAACAATTCCCGACGTACCCAAAATACGTTTCGcacatcaaaaaaatccacaatgGCGACGGAATCGAGCAAAAGTACATGTGTCATCTGTGTTCATCGACTTTCGAACGACCCACGCAACTCGAATTGCACGTGATAAAACACAAAGACCCAAAACCCTTCAAATGCGCTCATTGCGAAGCCGAGTACAAAGGAAGACACGGACTCGAAACGCATTTAATTCGGATTCATTTTCCGCATGAAGCGAAATTTACGTGCAATGTGTGTCAACCTGCCGCTCTTTTCGGCTCGAACGAACAGTATAAGACGCATTTGAATATTGTGCATTTTATGAATTCGAAGGAGAAACAAGAATGTCcgcattgcaaaaaaatgatacGAAAACTCGGATTGGCGCATCACATAAGGCAACAACACACAAATTCGGGCCCCAAGGAGAAATTCGAGTGCCCGagttgcaataaaatatttttcaataaaaaaggacTCGATATTCATTCGGTGATTCATCTGCCGGAGGATCAGAGACAATTTCGATGTCGGTTTTGTGGAAGgagttttaatttcaaacaacATTTGGTTGCTCATGAACGAAGTCATACGGGAGAAAAACCGTTTAAATGTGAAACTTGCGGAAAGGCTTTTGCGAGAAAACAGGCGTTGACAGATCATCAGAGAGAACATACAGGACAAGGGTATGTTTGTTCGGTTTGTAGTCGCGTTTTCACGGATCGAGGGAATTATCGACATCATATGAAGCAAcacGAGAGTCAAATGGGTgtcaaattaacatttaatcaCGAAGAAAGAAGATTAATGAGACTAAAAGTACTCACAGCAGAACAAGCACTGAAAGGAGGTTTAAACGAcgatttttcatag
- Protein Sequence
- MLLKVSLVLFFGIFVDAQDLCSGPNEAWNDCGSYCNQKCGEIELFCEFECTPDCFCVEGHRRNSLNICVPEEECDVRPQISAKTCSGINEFYTNCGNNCTDQCHSNEKTCRDTECQAGCFCRNGYKRNSAGICVPPKQCFCNDETEEYKAGDRCCESCEQIFCTQKYEIGCFCKAGLKRDPKTGKCVLPEKCPKSIVATLYCKENEELKCSNKCLELPKDEQGEGCTKECYYDCFCKEGFVRDSKTKKCVVPKKHEEQEWEEPHIVIKEEPFLGTETKAESHVIYPGIAYQLPADLPLPPLDNIKAPFFAEMTNSDGSKFYIEQKDKKSEIFVTNYDPRVTFCDICSFEVSKIEQIPQHRQGHFFTKTENGICRGCGYKFGVEEQSNHTFFCSKKDEIQEFICTECDFEAKDCRKLRAHVQRVHRQSEENEFLEEIQPVTKKKVKKVGGKDAAIDEYLSYLSLPENCVLPNLYKLSAQHSRMHPQPDGTSIYVGKGTNHLQVMNFDPRREKCELCGKSQLKNKPDLIAHRFKEHFFPSFAGNECQGCHKEFQTAESKIAHSHFCIKKSQIPVNFCRKCNEQFPTYPKYVSHIKKIHNGDGIEQKYMCHLCSSTFERPTQLELHVIKHKDPKPFKCAHCEAEYKGRHGLETHLIRIHFPHEAKFTCNVCQPAALFGSNEQYKTHLNIVHFMNSKEKQECPHCKKMIRKLGLAHHIRQQHTNSGPKEKFECPSCNKIFFNKKGLDIHSVIHLPEDQRQFRCRFCGRSFNFKQHLVAHERSHTGEKPFKCETCGKAFARKQALTDHQREHTGQGYVCSVCSRVFTDRGNYRHHMKQHESQMGVKLTFNHEERRLMRLKVLTAEQALKGGLNDDFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -