Cbre001030.1
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- -
- Assembly
- GCA_036172545.2
- Location
- CM070085.1:10856412-10860495[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.027 1 9.8 4.1 1 23 169 192 169 192 0.95 2 17 0.0027 0.1 12.9 0.7 1 23 245 268 245 268 0.93 3 17 3.9 1.5e+02 3.0 0.3 3 23 277 298 277 298 0.94 4 17 0.0073 0.28 11.5 0.5 2 21 304 323 303 324 0.94 5 17 0.007 0.27 11.6 1.8 1 23 364 386 364 386 0.97 6 17 4.6 1.8e+02 2.7 0.1 2 10 393 401 392 404 0.86 7 17 2.5e-05 0.00097 19.3 0.5 1 23 424 447 424 447 0.98 8 17 0.00097 0.037 14.3 2.4 2 23 479 501 478 501 0.95 9 17 0.0003 0.012 15.9 2.7 1 21 504 524 504 529 0.95 10 17 0.29 11 6.5 0.2 1 23 658 684 658 684 0.95 11 17 0.0021 0.082 13.2 0.1 1 23 740 763 740 763 0.97 12 17 0.46 18 5.9 0.7 3 21 800 818 799 819 0.92 13 17 0.013 0.48 10.8 4.3 1 23 862 884 862 884 0.95 14 17 0.97 37 4.9 0.1 3 17 892 906 891 914 0.85 15 17 0.00027 0.01 16.1 1.6 1 23 922 945 922 945 0.97 16 17 0.19 7.2 7.1 3.3 2 23 977 999 976 999 0.95 17 17 0.00019 0.0073 16.5 0.9 1 21 1002 1022 1002 1027 0.93
Sequence Information
- Coding Sequence
- atggaCTTTCTGGGGCACGGAAATGCTCTTACCTGTCGGTTATGTCTTTGCAAGTGCGAAAATGCTCGAAATTTATTGGAAGAAACTGACTTTGCTGTCAAAATTACAGAACTTTTCCCGAAAATTGTgatttcacCGGAAAATGGATTATCGACGATAATTTGCGAGTATTGCCATAACACAGTGCAACAATTTCTCGGATTTTACGAGAATGTGAACGCAAATCAGGATGAACTGATGAAAATGTTGCCGGATTTGCcaaaggaagaaatttttgcagaGCCCATTGTTTGTGTTGATGagaaaattgagcaaaaatgtctcaaatttGATGTCggtgatgatgaaaatttattttttaatgctaaAAAAGCCACAGATGAGGGTCGAAcagtaaaaaatccaaaaaataaaatttctccaacACTTCCATACACCAAAAGCGAACTCCAGAACATGAATTACTTTCAAATAATCAACTTACCTCCGAGTTTCAAGACTTGCTTCAAGTGTTCTTTATGTCAGGAGCTTTGCAAGAACTTTTCAGAGCTACAAAAGCATATAACGCAAAAGCATTTCGGGCATTTAACTGtcaacaaaagacaaaaagagGCAAATCcatatctgaaaaatttacaaaattattgtaatattTGCGGAAAACTCATTCCATGGACCGAAgcttgtgaaaaatattacgaGCACTCGTACCTCCATTACGGCATCCAGCCATTCAAATGTGACATTTGCGGATTCAGCACCAACGAAAAAAGTCTCGTGCGACAACACATGGTCCAAAAACACTTGTCGAAAATCAAGCAACTCGGCTGTCTAATTTGCAAACTGGATTTTGACTCGACAGCTTTGCGGAACGATCACATGCAAGAATCCCATCCGGAGAGTTTGCTCCCGTGTCAGAAGTGCAACACAAAATTCGTCGATTTACAAACGCTAAAAATGCACCAAAAACAATGCGAGTCATTTCAAATTGAATGCGTTCGATGTCCCGGCGGAATTCGCTTTCCCGACGAACGGATACTCGGCTTGCACATGCAGCAACACGAATTTCAAGACAAATACAAGAAAAGTTTCGCTTGTCATTTGTGTGAACGCGGTTTCGAGAGCAGCAACGTTTTTAAAACGCATTTGCGACTTCACGAAGAAAATGCATTGACGCCATGCGAGATTTGCGGCAAAACGGTAAATATGACAGAAGGAAGAAAATTGCCGAAACACATGGAGAGTCACATGAAGGAAAAACCCGAATTTTACAAATGCGATTTTTGCGGCGAGGAATTCGGGAAAAAGCAACAATTGGCGAGACATATTAACAAAATTCACAATCGCAGGGAAGAAAGTTGTTACAAATGTGGGCAAATGATTGTCATGTACTTGATGAGTCGCCATTTGAAGCATTGTCATGCGGGAGACTTGAAGTGCAAGCATTGTCCGGAGATTTTTAAGAAGCAAAGTGAGCGGATTAAACACACGAGACTCGTTCATTTGGGATACAAGTGCAAAAGGTGCAACATTCAGTTCCAGAATAAGTCGCAGTTGGAAGCGCATCAACGGCATGACGAATATCACAAGATAATTATTTCACCGGAAAATGGATTGTCAACGTTAATTTGTGACTATTGCTTCAACAAAATCCAACAATTTCTCGAATATTGGGACAATGTGAACGCCAATCAAGcagaattaatgaaattatcacTTCCTGAAACGataaaagaggaaatttttgcaGAACCAATTGACAATTTCGACCAAAAATCGTCTGAAAGTGAGGCGGAAAATGACGACAGCTTTACTATCGACAAGCAAGAACCTTTTGACGAGTCATCTGACGATACAAACTTCCCGCAAGAACCAATCTCGACTTCCACAAAAGTTCCCTACACGAAAGACGAGcttctaaaaatgaattatttcgaACTCAACCAACTTCCGGTGAATTTTCGGACTTTTTTCAAGTGTCCCATGTGTCGTCCCAGCACCGAACGCTTCAAAATCGTCTCAGCTTTGAAACTTCACATGGCACGATCACATTTCCCGAAAATTTCACCTCAAAAAATGCGTTTGAGAAAAGCTGGGGAACGCTTAAAACAAACTTACACGCATACTTTTTGTGAGATTTGTGACAAAATCCTGCCTTggtcaaaaaaatcgaaactttTCAAAGATCATAAATTCGTGCATTATGACATTAAGCCCTATAAATGTGACATTTGTGGCTTTAGTGCAGCTGAAAAGCGGTATTTGAGCTCTCACATAAGAGctgaacacgaaaaaaagcgGAAAAAACTCGGATGCGTCGTTTGTACAGCAACTTTTGAAAAGCGAGCATTGCGAAATGATCACATTTTCGAATGTCATCCGGAGAGCATTCGATCCTGCATGACTTGTGACatcaaatttttcgatgaGACCTCGTTCAAATCGCATTTTCGTGTTGGGCGATGTCGAATTAGTCTTGAAATTGAGTGCCCGCGATGTCCTGGCGGCATTCGGTTTCCCGATGAAAAAGTTTATGGCTTGCACATGCAACGCCACGCCTACGAAGATGGACTTCAGCGACTTTTCCGGTGTCATTTGTGTGAACGAGGCTTCAACAAGGAACATCTTTTACGAACGCATTTGGGCTATCACACGGAAAATGTCTTGGTTGCATGCGAAATTTGCGGAAAAACCGTATTTCATGATTCGACACTTAAGGCGCCAGCGCATATGGAAGTTCACAAGGAGCCAAAACCGGAATTTTACAAATGTGACATTTGCGGCGAGGAATGCAGTAATAAGATGAAATTGGCGAAACATTTTAACAGAGCGCACAATCGGAATGAGGAAAGTTGTTATAAATGCGGAAAAATAAGACCAAAGTATGGAATGAAGAAACATTTGAAAGCTTGTCACGGAAATGAGCTGAAATGCGCCCATTGTCCGatgatttttgacaaaaaaagtacGCGAAGTCGACATACGTCACGTTTTCACATCGGATTCAACTGCAAACGATGCAATTTGACATTCGCCACGTCTTATTTGCTCAAGAGACATCGACAAGTCGACGAAATTCATTTAGCAACAAAGAAACCCAAGCCTTAA
- Protein Sequence
- MDFLGHGNALTCRLCLCKCENARNLLEETDFAVKITELFPKIVISPENGLSTIICEYCHNTVQQFLGFYENVNANQDELMKMLPDLPKEEIFAEPIVCVDEKIEQKCLKFDVGDDENLFFNAKKATDEGRTVKNPKNKISPTLPYTKSELQNMNYFQIINLPPSFKTCFKCSLCQELCKNFSELQKHITQKHFGHLTVNKRQKEANPYLKNLQNYCNICGKLIPWTEACEKYYEHSYLHYGIQPFKCDICGFSTNEKSLVRQHMVQKHLSKIKQLGCLICKLDFDSTALRNDHMQESHPESLLPCQKCNTKFVDLQTLKMHQKQCESFQIECVRCPGGIRFPDERILGLHMQQHEFQDKYKKSFACHLCERGFESSNVFKTHLRLHEENALTPCEICGKTVNMTEGRKLPKHMESHMKEKPEFYKCDFCGEEFGKKQQLARHINKIHNRREESCYKCGQMIVMYLMSRHLKHCHAGDLKCKHCPEIFKKQSERIKHTRLVHLGYKCKRCNIQFQNKSQLEAHQRHDEYHKIIISPENGLSTLICDYCFNKIQQFLEYWDNVNANQAELMKLSLPETIKEEIFAEPIDNFDQKSSESEAENDDSFTIDKQEPFDESSDDTNFPQEPISTSTKVPYTKDELLKMNYFELNQLPVNFRTFFKCPMCRPSTERFKIVSALKLHMARSHFPKISPQKMRLRKAGERLKQTYTHTFCEICDKILPWSKKSKLFKDHKFVHYDIKPYKCDICGFSAAEKRYLSSHIRAEHEKKRKKLGCVVCTATFEKRALRNDHIFECHPESIRSCMTCDIKFFDETSFKSHFRVGRCRISLEIECPRCPGGIRFPDEKVYGLHMQRHAYEDGLQRLFRCHLCERGFNKEHLLRTHLGYHTENVLVACEICGKTVFHDSTLKAPAHMEVHKEPKPEFYKCDICGEECSNKMKLAKHFNRAHNRNEESCYKCGKIRPKYGMKKHLKACHGNELKCAHCPMIFDKKSTRSRHTSRFHIGFNCKRCNLTFATSYLLKRHRQVDEIHLATKKPKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -