Cbre008539.1
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- -
- Assembly
- GCA_036172545.2
- Location
- CM070086.1:30317812-30319149[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 7.9 3e+02 2.0 0.3 2 23 136 160 135 160 0.81 2 10 0.061 2.3 8.6 0.4 6 23 170 187 170 187 0.98 3 10 0.032 1.2 9.5 1.2 2 23 194 215 193 215 0.93 4 10 0.00046 0.017 15.3 2.4 1 23 222 244 222 244 0.97 5 10 0.0017 0.064 13.5 2.3 1 23 256 279 256 279 0.96 6 10 0.013 0.51 10.7 6.7 2 23 286 308 285 308 0.94 7 10 0.0082 0.31 11.4 0.1 2 23 317 339 316 339 0.96 8 10 0.0011 0.042 14.1 0.2 1 23 345 368 345 368 0.96 9 10 0.00074 0.028 14.7 6.6 1 23 374 396 374 396 0.98 10 10 0.0008 0.03 14.6 3.5 1 23 402 425 402 425 0.97
Sequence Information
- Coding Sequence
- ATGAGCCAATGTCGCCTTTGTTTGAGCCCAAAAAAGCCTTTAAAAGACTGGAATGAGGCTTTAGACGAAGGAAAATCCGAAAAAGGGACTGTTAAAGAGACTTTGCTGAAAATTTTCCGTCTTGACGAGCTTCAGGAACAACAAAATGGAGCAATTTGTGATGCCTGCTTTGAAAAACTTCAAGAAATTCACGAGTTTTATGAAAGAATTTTGGAAAGTCATCgagttttaagtgaaaaatcatcgaaaaatgCCTCGGAAGTGCCTTCAGATGTCGATTGtgatacaaatttttccaCCGAATTGCCTAAAATTGCTCCGCAAAGCCTAAAAAAGGTTCAAAAGTCATCGAAAAAACATCAACAGTCCCAAGAAGATCAAATAATCAAAGAATTTTACGGGCTACGATGTCAACAATGCACGGAAATGCCTTCTTTTGATACTTTAAACAAATTACGGGATCATAATCGAGCTGCACATTCCCTCAAAGTCACCACGATCGAAtgttgttcgaaaattttcaagaaacgCGGTCAATTATTGGATCACGCCAAGAGTCACATCAACCCCGAAGAGCTTACATGTCTCGAATGCAACAAAATTTGCGCCAATCGGTATCGTTTGAAGCTTCACGCAGCGCAAcatcaaaattcacaaaaatcttTCGCCTGCCCGACATgcgaaaaacgatttttaacgTCGTGCAACTTGAAAGCTCACGAAAAAACGCATTTATCTTCGGAGGAAAAGGCGGCAATGAAAACTCACGTTTGCCAGACTTGCCAAAGTGCTTTTATGTCGAAATCGCTGCTCGCCCATCACATTCGGCAGATTCACGAGAAGCGCTATACGTGCATTTGTGACATTTGCGCCCGAAGTTTCAagacaaaaatgcattttttgagtCATTACAGGCATGTGCACACAAATCCCGACCAAATTCGGGTGCAATGTCAGATTTGCGGGAAATGGGTGGCAAATGAGCAAGCCTTGAAGAAGCATGTGAGACTGAATCACGACGATCCGGGTCCGCATGTGTGTTCGGAATGCGGAAAAGAGGCGCCCACGAAGAATGCACTGATTTCGCATGAAAGGTACATGCACAAGTCGGCGAATAAGTTCAAATGTCAGTTTTGTGTGAAGTGTTTTAAGAAGCCGATTCACCTGAGGGAACATCTGACGACGCATTTGGGCGGCGTGTTGTACCGATGTGACTTTTGTGAGAAGACTTTCAACTCGGGAGCGAATTATTTCAAGCATAGGAAGCAGAAACATGCGgaagaattaaagaaaaagggaggaaaagggaaaaattgttggagtaacttgaaattttga
- Protein Sequence
- MSQCRLCLSPKKPLKDWNEALDEGKSEKGTVKETLLKIFRLDELQEQQNGAICDACFEKLQEIHEFYERILESHRVLSEKSSKNASEVPSDVDCDTNFSTELPKIAPQSLKKVQKSSKKHQQSQEDQIIKEFYGLRCQQCTEMPSFDTLNKLRDHNRAAHSLKVTTIECCSKIFKKRGQLLDHAKSHINPEELTCLECNKICANRYRLKLHAAQHQNSQKSFACPTCEKRFLTSCNLKAHEKTHLSSEEKAAMKTHVCQTCQSAFMSKSLLAHHIRQIHEKRYTCICDICARSFKTKMHFLSHYRHVHTNPDQIRVQCQICGKWVANEQALKKHVRLNHDDPGPHVCSECGKEAPTKNALISHERYMHKSANKFKCQFCVKCFKKPIHLREHLTTHLGGVLYRCDFCEKTFNSGANYFKHRKQKHAEELKKKGGKGKNCWSNLKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -