Basic Information

Insect: Culicoides brevitarsis
Gene Symbol: -
Assembly: GCA_036172545.2
Location: CM070086.1:886041-888981[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.61 23 5.5 0.3 1 11 209 219 209 223 0.91

2 16 0.026 1 9.8 1.5 2 23 241 263 241 263 0.97

3 16 7.3 2.8e+02 2.1 0.3 8 21 277 290 268 291 0.85

4 16 0.58 22 5.5 3.6 3 23 440 460 439 460 0.96

5 16 1.9 71 4.0 0.5 2 23 468 491 467 491 0.92

6 16 0.095 3.6 8.0 0.5 1 23 497 520 497 520 0.95

7 16 0.75 29 5.2 0.1 2 21 525 544 524 545 0.93

8 16 0.066 2.5 8.5 2.4 2 23 680 701 679 701 0.97

9 16 0.00097 0.037 14.3 4.3 1 23 706 729 706 729 0.92

10 16 0.014 0.55 10.6 0.2 1 20 733 752 733 754 0.96

11 16 1.1 41 4.7 2.2 3 23 766 785 764 785 0.78

12 16 3.6e-05 0.0014 18.8 1.6 2 23 792 814 792 814 0.96

13 16 0.00041 0.016 15.5 1.4 3 23 821 842 820 842 0.96

14 16 5.8 2.2e+02 2.4 0.5 2 23 848 869 847 869 0.86

15 16 9.1e-05 0.0035 17.5 5.7 1 23 875 897 875 897 0.98

16 16 0.025 0.96 9.8 2.2 1 23 903 926 903 926 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.61	23	5.5	0.3	1	11	209	219	209	223	0.91
2	16	0.026	1	9.8	1.5	2	23	241	263	241	263	0.97
3	16	7.3	2.8e+02	2.1	0.3	8	21	277	290	268	291	0.85
4	16	0.58	22	5.5	3.6	3	23	440	460	439	460	0.96
5	16	1.9	71	4.0	0.5	2	23	468	491	467	491	0.92
6	16	0.095	3.6	8.0	0.5	1	23	497	520	497	520	0.95
7	16	0.75	29	5.2	0.1	2	21	525	544	524	545	0.93
8	16	0.066	2.5	8.5	2.4	2	23	680	701	679	701	0.97
9	16	0.00097	0.037	14.3	4.3	1	23	706	729	706	729	0.92
10	16	0.014	0.55	10.6	0.2	1	20	733	752	733	754	0.96
11	16	1.1	41	4.7	2.2	3	23	766	785	764	785	0.78
12	16	3.6e-05	0.0014	18.8	1.6	2	23	792	814	792	814	0.96
13	16	0.00041	0.016	15.5	1.4	3	23	821	842	820	842	0.96
14	16	5.8	2.2e+02	2.4	0.5	2	23	848	869	847	869	0.86
15	16	9.1e-05	0.0035	17.5	5.7	1	23	875	897	875	897	0.98
16	16	0.025	0.96	9.8	2.2	1	23	903	926	903	926	0.93

Sequence Information

Coding Sequence: ATGGATGAATGTTGCATCGCATGTCTCAGCGAGAATCGTCAAAGCTTCGCCGGAGTACAGGAAAAGGAAAgaattgaagaatttattgctgaaaagttaCCTCCTGTTTTTGCGAATTTTCCTGTAATTTTGTGTAATGGATGCTCGTTTCAATTGGAAAAGTATCGCAACTTCCGTCAAAATGTCCTGAATTCCATCAATACACTCACAGCTCAGTTGAACAAGATTTACGGATGTCGTGTATTTGTTGAACCTCTGCCAATTACGATCGATCCaataattaaagaagaaaattctgaAACATTTGTCAATGAATTTGTCGAGAATGAAATCGTTAATGAGCCTATAGACGATGATTTTGACAATTACGAACCGGAAAACGATTTCGATGCAGAAGATTCTGATGCTTCGTATGAACCAGAGatcgaaaaatcaacaaaagaaGCGAAAACAAATTCTTCTGTGCCAAAAACGAAGGAGAAATACAGAGTAATTAAACCCAAAGAACGCAAATCTCGTGAAAATATCGATCCgtattgcaatttttgtaaaattatgataaaagatgagccatttttgtttcatctgAAGCGAGAACACTTTACGAAACTCAAATCTGGCTTTCATAAGTGCAAAATTTGTGATCAAGAGTTCAAAGCAGGATCGAACAGCGGAGTAACTTATCATTTTGATATGCATCGAGAATTCAAAACGACTCGAAAGTGTTCAGAATGCAAAGATTCGTTCAAAAAAGTCGGCGAATGGCGAAAACACATAAGAAATAGACACACAACGACAACTTACGAATGTTTATGTTGCGAAGAAAGACACACTTTTGTCAGTAAAAGAGAGTTAATGGACCATTTGAGGGAGTTTGGAAGTGATACGGAAGAGGAAAAGACAGAAAATGAAGAGATAATTAACGAATCAATCACTGAACAAACAATCAAAAGCGAAAACACGCAACTTGATGACTTTCAAGACAAAACTCTCGACGAATGGGGTGAAACATGGCAAGATTCTTTCATCCCTGATCATACAAATGTTCCTAAAAACGACTCAAAAGTCGATTATCGTGTACAAGTCTATGGAGGTCGAACACGTGTTCATACAGTATCAAAgggaaaaaccacaaaatggCATCAATACATCCGAATGTTCAAAGATAAACTTCCAAGTCGTCATTTGGAGTCGAAAAAACGAGCTTTTATAGGTCTCGATGTCGATTGCAGTATATGTGGTTTGGAGAAACTCGCTCGAAATTATCGCGCTCATGTAATTTCAACACATGCCATTTTGGAAAATGACAAAGTTTTCTGCAAAATTTGCAATACGGAGTGTACAAGTCAACAATCGTTCGTTTATCATTTTGATACTCATCGAATTTTGGATCCTCCAAAGAAATGCGAAGAAAAAGGATGCGACGAAGTCATGAACAACATGAAAGATTTCAAACGTCATACCGAAGCACATCGTTACAAAAAGGAATTTCAATGCCCCGATTGCGACAATCAGTATTTCCGTATCGCTTCTTTGCAATTTCACTACATGACAGTACATACAGGAGCTCTGATGTGTCGTTTCTGTCAACTTGTGTTCGAGCTAAAAGAGGATTATGATCGCCATATAAAAGCTGAATATGCAGCACGAAAGGAAAGGAAAAGTTTGATGCGTTACACGAAAATTCGATTAGCTCGTGAAAAAGAAAAGGAGCAAAAATTGAAGGATGGCGTGTTGGAAGATGAAGATGAAGAGGATGAAATGAACGAATTACCGATGGTTTTTGGGCGTACAATGACGATAGTTAATGCGAAAAAACGCACAGAACCATTAACAGTGAAATCCACAAAATTCTCGCAGAAAAGTTATTGTCACATTTGTCGAATTAACGTTGCGAATTTCAAAAGTCACGTCACGGATGCGCATTCGACGAGACTTCCAACGGGCGGTTACAAATGCAACGTGTGTCATTCGTGCCTTAAAGACAACTTTTCGatccatttttatcaaaaccaTCGTGAATATCCGGAAGTTCAACAATGCGAACATTGCGATTTCAGTTCCATCCGTTACGAAGTTTTCCGAAAACATCAAATGCTCCACAAACGAGGACTTTTCGAGTGTCATTATTGCGGATTATCGTACACGGAGAAAACTAGTTTGCGTTATCATATGTTCTTCAAGCACACGGAGCTCTTCATTTGTAATTATTGCATGAAAACTTTCGACGACGAAGCAACTTTCAAAGATCACATGGTCGAAGAAAAGGGAAAACGTCGTCGAAAAACCAACGTTTGTGATATTTGTGGATTTACGACGACACATTCGCTAAAAAGTCACATGACACGAAAACATGGAGATCAAACAGAAGCTCAATGCGAGGTGTGtggcaaaaaatgcaaaagtgCGACAAATTTGAGGGATCACATGTTGAATGTTCATACCGAAAGAACTGTTGCTTGCCCgcaatgtgataaaaaattccgAAATCACGCTTATATGAGGGAACATGTTAAGATAACACACACCACGGAGACCGTTCAATGTCAAATGTGCGAAAAAGTAGGAACGCCTTTCCAGATAAAACgacattttaactttattcATGAGACAACGAAGCCTTTTCAGTGCAAAATTTGCCATATAACGTTCAAGATGAAATCCGGGTTGCAAAAACATTTGCATTCTCATGCGGGAACGAGACCTTTTAATTGTCATGTGTGCTCCCAAGGCTTCTACAATCGAAATTTGGTACAGAAACATTTGTTGGATCGACATAATATGACGTTGACACACGAGGAAATTCGAGCTATTTATCGGAGGATGCCTTCGACATATGAACATGAGCATTTTGGgcagaaaaatgatgaagattatgattaa
Protein Sequence: MDECCIACLSENRQSFAGVQEKERIEEFIAEKLPPVFANFPVILCNGCSFQLEKYRNFRQNVLNSINTLTAQLNKIYGCRVFVEPLPITIDPIIKEENSETFVNEFVENEIVNEPIDDDFDNYEPENDFDAEDSDASYEPEIEKSTKEAKTNSSVPKTKEKYRVIKPKERKSRENIDPYCNFCKIMIKDEPFLFHLKREHFTKLKSGFHKCKICDQEFKAGSNSGVTYHFDMHREFKTTRKCSECKDSFKKVGEWRKHIRNRHTTTTYECLCCEERHTFVSKRELMDHLREFGSDTEEEKTENEEIINESITEQTIKSENTQLDDFQDKTLDEWGETWQDSFIPDHTNVPKNDSKVDYRVQVYGGRTRVHTVSKGKTTKWHQYIRMFKDKLPSRHLESKKRAFIGLDVDCSICGLEKLARNYRAHVISTHAILENDKVFCKICNTECTSQQSFVYHFDTHRILDPPKKCEEKGCDEVMNNMKDFKRHTEAHRYKKEFQCPDCDNQYFRIASLQFHYMTVHTGALMCRFCQLVFELKEDYDRHIKAEYAARKERKSLMRYTKIRLAREKEKEQKLKDGVLEDEDEEDEMNELPMVFGRTMTIVNAKKRTEPLTVKSTKFSQKSYCHICRINVANFKSHVTDAHSTRLPTGGYKCNVCHSCLKDNFSIHFYQNHREYPEVQQCEHCDFSSIRYEVFRKHQMLHKRGLFECHYCGLSYTEKTSLRYHMFFKHTELFICNYCMKTFDDEATFKDHMVEEKGKRRRKTNVCDICGFTTTHSLKSHMTRKHGDQTEAQCEVCGKKCKSATNLRDHMLNVHTERTVACPQCDKKFRNHAYMREHVKITHTTETVQCQMCEKVGTPFQIKRHFNFIHETTKPFQCKICHITFKMKSGLQKHLHSHAGTRPFNCHVCSQGFYNRNLVQKHLLDRHNMTLTHEEIRAIYRRMPSTYEHEHFGQKNDEDYD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -