Cbre001033.1
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- -
- Assembly
- GCA_036172545.2
- Location
- CM070085.1:10867933-10874066[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.11 4.1 7.9 0.3 1 23 168 195 168 195 0.92 2 23 0.0087 0.33 11.3 2.5 1 23 237 260 237 260 0.97 3 23 0.00026 0.01 16.1 0.6 1 23 358 380 358 380 0.97 4 23 0.093 3.6 8.1 0.5 3 17 388 402 387 410 0.83 5 23 7.3e-05 0.0028 17.8 0.9 1 23 418 441 418 441 0.96 6 23 0.032 1.2 9.5 0.2 2 20 447 464 446 465 0.86 7 23 0.29 11 6.5 3.3 2 23 473 495 472 495 0.93 8 23 0.02 0.77 10.1 0.4 1 21 498 518 498 519 0.97 9 23 0.015 0.58 10.5 2.8 1 23 587 610 587 610 0.95 10 23 0.0076 0.29 11.5 1.6 1 23 663 686 663 686 0.97 11 23 0.43 16 6.0 0.3 2 23 722 744 721 744 0.93 12 23 0.019 0.72 10.2 5.9 1 23 783 805 783 805 0.98 13 23 8.2e-05 0.0031 17.7 1.3 1 23 842 865 842 865 0.97 14 23 3.5 1.4e+02 3.1 0.2 3 19 872 887 871 890 0.71 15 23 0.25 9.5 6.7 1.8 2 23 897 919 896 919 0.94 16 23 0.027 1 9.7 2.0 1 21 922 942 922 947 0.93 17 23 0.0018 0.067 13.5 0.3 1 23 1138 1161 1138 1161 0.97 18 23 0.15 5.6 7.4 0.6 2 23 1169 1191 1168 1191 0.93 19 23 0.74 28 5.2 0.1 2 23 1197 1219 1196 1219 0.93 20 23 0.015 0.56 10.6 0.8 2 23 1261 1282 1260 1282 0.96 21 23 8.5e-07 3.2e-05 23.9 0.8 1 23 1320 1343 1320 1343 0.98 22 23 0.041 1.6 9.2 2.6 2 23 1375 1397 1374 1397 0.94 23 23 0.22 8.5 6.9 1.8 1 21 1400 1420 1400 1425 0.92
Sequence Information
- Coding Sequence
- atgactcacgacacaaaaaattgtcgtttATGTCTCTGTAAATGCGAAAATCCCCGAGATTTGCTGGTAGAAACGACTTTTGCCTCAAAAGTCATGGAAATTCTCCCCAAAGTTCAAatttctcCGGAAAATGGCTTCTCAAACATGATTTGTGACTTTTGCTACAACACAGTTGAACAGTTTTACGGATTTTATGAGCTCGTAAATACAAACCAAGAAGCTTTGATGAGCGTTGAAATCCACGAAATGAAGGAAGAGATTTTTGCTGTTCCAATTGAGGCTCCTGTAGATGTAAAAATCCACGAAGATCTCGATGAACGAGGATGGTTTGATAAAGTTGAAGCTCCTTTGATTGAACCGCCGTTGGaagaaattcgtaaaattgctgaaaaatcaaagaaaaaagttgcaaaagaTAAAAAACCTAAAGTTGTCGTCGAAGCGCTTGAAAATTTGGATTATTTCGAGTTAATTAAACTTCCGCCGTCTTATACTTGCAGCTTTGTATGTCCTTTGTGTCCCAAGAGATCAACTGAGAGATTCGGTACAAAGCAAGAACTTCAATCGCACATCATGGAAAAGCACAAGAATCGTTCAAGCGAAGCAAAATTAGAGGATTTGCACGTTCAATGCGACATTTGCAACAAGCCCGtgaaaaaattccatcaaaatccGGATCACAAATATTTCCATTACGGCATAAAACCTTACAAATGTGATCTTTGTGACTTTGAATCTCACACAAGAAGCACTTTGAGGGGTCATATGCGACAATTACATTCCACATTAGCCAAACATAtcgtttgtttttattgccGGATCGAGTTTGGATCAACTTTCGCCCGTAATGAGCATGTTTTGAAGGCCCATCCCGACCAATTGATGACTTGTGACTTTTGCGGCGAGAAATTACTCGGTCGATATTGGGCGAAATTGCATTTTACCAAACAtatcgatgaaaaattgaccATCGAGTGTGAAAGATGTCCCGGCGGTGTGAGATTTCACAGCGAAAAGGTCCTGCAACTGCATCGAAAGCAGCATTTACGCGAAGATAAGACACGAAAACGGTTCGCTTGTAATTTGTGTGAACGAAAATTCAACAGTGAAGCCGCCTTTGAGCGTCATTTGCGGTATCATGCCAAGGGACACATGGTTGCGTGTCATATTTGCGGTAAAACGGTGCAAACCAACTCTTATTTGCAGATGAAATCTCACGCGAGGAcacataaaaaagttgaagttCAGGAATTCAAGTGCGAAAAATGCGATGAGGTGTTCCAAAGTCGCTACAAACTCACAAGACACGGAAATGTCGTTCATAATCTCAATCAGGTCACTTGTCATTTGTGTGGAAAGGTATTtgcggagcaagatttgaaacGACATTTGGTTTATTGCAATGCGGGCGAGCTGAAATGTCGTCATTGCCCGATGACATTCACGAAAGAGTCCGCGAGACAATTGCACAACAATAAATTCCATACGGGATTCAAATGTCGACGGTGCAACATCGTTTTTGAGAATCGAACGCAAATGGATGCGCATCAGAGGGACattatgaaggaaaaaatgatCCAAATTGATGAAGAAAGTGATCATGATTTCGATTTTGATCAAGAAATTCACGAAAACTCACCTgatgaagatgaaaaattgccGGAAACACAAAAACCTGAAGTTTCTTATACAAAAGAACAACTTGAAACGATGGATTTTCATCAATTGAACAAACTTCCCGCGAATTTCgggattattttttgttgtccttTGTGCTCCGAACGTTTCAAATATGACAAAGCACTTAAAACtcacattttacaaaaacatttcaagCGTTTCAGTCCCGAAAAACGAAAATCCGAAGCAAAATCTTATTTGGAGAACATCTTTCCTCAATGCGATCTTTGCGAAAAATCTCTTTCGTGGTACCTAAAAGCTCAAAATATCCTGGATCACAAATTTCATCATTACGGCATCAAACCCTACAAATGCGAATTATGCGGATTTGCAACGacgtacaagaaaaaaatccgaaatcACATGACGAAAGTTCACATTCCGAAATCCCAGCGTTCTGGATGCTTTTATTGCGCCGCGGATTTCGCCTCAGGAGCTTTAAGGAACAATcatgtgagaaaatttcatgcGGAAAAGTTACTTACGTGCGAAAAATGCGGCGTAAAGTTGTTGGATCAATCAACGATGGCGAAACACATGCAATTTGAGCATCCAGCGAACTTTCAAGGACTTGTTTGCGAGAAATGCCCGGGCGGAGTGCGCTTCCCAAACGAACATGTGCTCGAATTACATCGAAAGCTGCATGAAATACCAACGACTTGTCGTTTCAAGTGTCATTTATGCGAGCGACGATACCAAAAGGAGGTCAGTTTGAAGCATCATTTGCGACTTCACGCCGAAAATCGCCTAATTGCATGCGAAATTTGCGGAAAAACGATCGCTTTGGAGCCAAAAGGACCGCCGCAGCACATGAGAATCCACAAAACGCCGAAACCCGAAAGCTTTGAGTGCAACGAATGCTCTGAAAAATTCACAACAAAGAATTTTCTGATAGctcacttgaaaaaaatgcactttcgTCGCGACGAGCCATGTCATAAATGCGGAAAAATGATCCCGAATTACTACATAACACGACATTTGGTGACTTGCAACTCCGGGGAGCTAAAATGCGTTTATTGCCCCatgattttcaagaaaatgagCGAACGTAGCAAACATACGAAACAATTTCACATCGGTTTCAAGTGCAAAAGATGCAATATTCAGTTCGAAACGAACTCGCAACTGGAATTTCATCAAAGATACAgcgaaaatcacaaaaatatgaGGCTGCCAAAGTATatttcacCGAAAAATGGACTTTCAACACTAATTTGCGACTACTGCCATAAAACAGTGCAAAATTTTATCGGTTTTTACGAGAATGTGAACGCAAATCAGGATGAACTGATGAAAATGTTGCCCGAAATCCCCAATGAAGAGGTATTTGCGGAGCCAATTGTTAGTTTTGAGTACAAAATGCAGCCGTCTGACTtgaaaatggatgaaaatgaaGCAGAATTGGCAGTTAATGAGCCAGAAGAGACGGAAAATACGAACTTGAGTCTCTTAAACTTCTTTGAACTCGTCAAATTGCCACTTAGTTTCGGAAAATTCATTCGTTGCCAGCTCTGTCCCAACTCAGAACGATATAAAAACATCACGCATCTCAAGCCGCATATCATAAAATCCCATTTGGGGCATTTACGGTTCACGGAAAAGCCGAGAGAGGTAAAGCGGTATACGGAAAACTTGGATTCGTACTGTGATGTGTGTGAAAAAGTGTTGCCGGCACCCAAAACGATCGCTTATCAAGACCATAAATTCCTGCATTATGATATTAAGCCGTACAAATGCGAAATTTGTGGTTATGAGACGTCGTCGAAGAATTTAATTCGCATTCatatcatcaaaaaacacTTGGAACCCGTGAAAAAATGGAAGTGCAATACCTGTTCGATGGATTTCGAGTCAAAagaatcgaaaaataatcacatAATTGAAAGACAttccgaaaatttaattccgtGTGAGAAATGTGGCGTAAAATTACTCGACAAAAAAGCGCTAAGGACCCATTTGGAAGTCGAACACACCGAAAATTCGCAAAAACTCGAGTGTTCGCGTTGTGTAGGCGGCATAAAATTCCCCAACGAACGCGTTTTAGCGCTGCATCAGCAACAACACGTCCGCGAAGACAAAGTCAAGAAAACTATTTACTGCAATTTGTGTGAACGAGGCTTCAATTACGAAAATTCCTACAAATCTCATCTAAAATTGCACGCGGAAAATCGTTTAAAAGCTTGTGACATTTGCGGAAAGACAATTTTCTTCGAATACGGAAGAAGAATCTCGAAACACATGATGAACCACACGAAAAAACAGCCGGAAATCTTCAAATGTGACAAATGCGGCGAGGAATTCACGAGAAAAGGCGCGTTATCGAAGCATTTGAGGAAAATTCATGATCGCAGGGAGAAAAGTTGCTACAAATGCGGCAAATTGATCGAGCAGTATTTGATGAAGagacatttgaatttttgtaattacgGGGATTTGAAGTGTTTTCATTGTCCGATGGTGTTTAGCAAGCCGAGTGAACGGGATAAACACACGAAACAGACGCATATTGGGTATAATTGTCGAAGATGCAAtataaagtttgaaaattcgtCGCAACTGGAGTTTCATAGGAGATACAACGAAAATCACAAGAATTATAAGAATTTGTTGAACAAACGACGGAGTGATcaataa
- Protein Sequence
- MTHDTKNCRLCLCKCENPRDLLVETTFASKVMEILPKVQISPENGFSNMICDFCYNTVEQFYGFYELVNTNQEALMSVEIHEMKEEIFAVPIEAPVDVKIHEDLDERGWFDKVEAPLIEPPLEEIRKIAEKSKKKVAKDKKPKVVVEALENLDYFELIKLPPSYTCSFVCPLCPKRSTERFGTKQELQSHIMEKHKNRSSEAKLEDLHVQCDICNKPVKKFHQNPDHKYFHYGIKPYKCDLCDFESHTRSTLRGHMRQLHSTLAKHIVCFYCRIEFGSTFARNEHVLKAHPDQLMTCDFCGEKLLGRYWAKLHFTKHIDEKLTIECERCPGGVRFHSEKVLQLHRKQHLREDKTRKRFACNLCERKFNSEAAFERHLRYHAKGHMVACHICGKTVQTNSYLQMKSHARTHKKVEVQEFKCEKCDEVFQSRYKLTRHGNVVHNLNQVTCHLCGKVFAEQDLKRHLVYCNAGELKCRHCPMTFTKESARQLHNNKFHTGFKCRRCNIVFENRTQMDAHQRDIMKEKMIQIDEESDHDFDFDQEIHENSPDEDEKLPETQKPEVSYTKEQLETMDFHQLNKLPANFGIIFCCPLCSERFKYDKALKTHILQKHFKRFSPEKRKSEAKSYLENIFPQCDLCEKSLSWYLKAQNILDHKFHHYGIKPYKCELCGFATTYKKKIRNHMTKVHIPKSQRSGCFYCAADFASGALRNNHVRKFHAEKLLTCEKCGVKLLDQSTMAKHMQFEHPANFQGLVCEKCPGGVRFPNEHVLELHRKLHEIPTTCRFKCHLCERRYQKEVSLKHHLRLHAENRLIACEICGKTIALEPKGPPQHMRIHKTPKPESFECNECSEKFTTKNFLIAHLKKMHFRRDEPCHKCGKMIPNYYITRHLVTCNSGELKCVYCPMIFKKMSERSKHTKQFHIGFKCKRCNIQFETNSQLEFHQRYSENHKNMRLPKYISPKNGLSTLICDYCHKTVQNFIGFYENVNANQDELMKMLPEIPNEEVFAEPIVSFEYKMQPSDLKMDENEAELAVNEPEETENTNLSLLNFFELVKLPLSFGKFIRCQLCPNSERYKNITHLKPHIIKSHLGHLRFTEKPREVKRYTENLDSYCDVCEKVLPAPKTIAYQDHKFLHYDIKPYKCEICGYETSSKNLIRIHIIKKHLEPVKKWKCNTCSMDFESKESKNNHIIERHSENLIPCEKCGVKLLDKKALRTHLEVEHTENSQKLECSRCVGGIKFPNERVLALHQQQHVREDKVKKTIYCNLCERGFNYENSYKSHLKLHAENRLKACDICGKTIFFEYGRRISKHMMNHTKKQPEIFKCDKCGEEFTRKGALSKHLRKIHDRREKSCYKCGKLIEQYLMKRHLNFCNYGDLKCFHCPMVFSKPSERDKHTKQTHIGYNCRRCNIKFENSSQLEFHRRYNENHKNYKNLLNKRRSDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -