Cbre013660.1
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- -
- Assembly
- GCA_036172545.2
- Location
- CM070087.1:34799524-34801386[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.005 0.19 12.0 1.1 1 23 289 311 289 311 0.98 2 10 0.023 0.87 10.0 1.9 1 23 317 339 317 339 0.98 3 10 0.00051 0.019 15.2 0.5 1 23 345 367 345 367 0.96 4 10 0.00035 0.013 15.7 0.2 1 23 373 396 373 396 0.91 5 10 3.2e-05 0.0012 19.0 0.3 1 20 402 421 402 424 0.93 6 10 0.00046 0.018 15.3 1.9 1 20 431 450 431 453 0.92 7 10 1.7e-05 0.00063 19.9 3.3 1 23 459 482 459 482 0.97 8 10 0.073 2.8 8.4 0.3 1 23 495 517 495 517 0.92 9 10 1.1 44 4.6 0.1 2 23 523 544 522 544 0.90 10 10 0.46 17 5.9 2.2 1 23 551 574 551 574 0.94
Sequence Information
- Coding Sequence
- atgGCAAATATTGCTGAAAAGAAGATGTGTCGCTTCTGTTTTGAACCTGATGCGAAAAAACTTGAAGATATTTTCTTGCAAATACCCGGAAAAACGCCTTTAGCTGTACAAGTGATGTCTTGCGTCTCGATTGAAATCTTTGAAGGAGATGAAATGCCCCGTTTTTGCTGTAATATTTGCCGAAAACTAATGGAAGTGATGCATCAGTACAAACAAATCTGCCGAAAATCTGATATTTTGCTGAAACAAAGTCAAATTACGGGAAATTTAACAGGAAATGTGTTCGAGTTGCCTTTAAAGCTACTTCGAGAGTGCTTACCTGATGAGAAAAAAGCTTCCAAAGTGACTTCAGATCAAAGTACAATGACAGAAATCCCCAAAAAAGTCGATAAAGCAACtgaaacgatgaaaaaaagtcaagtaACGAAGGAAACACAAACAAttgagaagaaaattgtttcaaaatcggaggatttgaagaaaatttcaattgaaaaagctCCAAAATCATCACAAACGAcaataaaaactcattttctGAAGAAAACTCCAACGGCAGAgacgaaaattgttaaaaaagtcGAACctaaagttgaaaaagttcAACCAGTGACGCTCGTAATTGAAAATGTCGTCGAAGGATCTCCCATTGAAGTTCAAACCTCCGAAGAGCAAATCGAGATACTCGAATTAACCCAAGATGAGTCCGAAAAGTTGGTTGAACAGCCTTTCTTGCTGAATAAATGTTACGAACAAACCACATCGAAGCCTGtgattgaattcaaaaaatttgtcatgaccgacaatggaaattttgaagttgaaattcTCGAAGGGATCGAAGGTTCGAACGAAAAAGCCATTTTTTCGtgtgatttttgttcaaaaacctACATGATTAAACAACAACTCGAACTGCATTTGGAAACGCATTTCAAAGAACGCAAATTCACTtgcgaaaaatgtcaaaataaatatttgtcgaaaaatgaTCTTGTGAAACACTTGCAAACGCATGCCTCCGAGAGACAACATGTTTGTGTCGTTTGTGATCGATCCTTCGCCCGAAGTGGTATTTTGAAGAGACATTTATTGCAACACGAGGAACATTTGacttttgtgtgtaaaaaatgCCCCGAAAAATTTGTCACAGATGCCGATTTGCAGAAACACGTTGAATTCGTGCATAACAAGCCTCGCCCGTTCCCCTGTAAACTTTGCGACAAATCATTCGCCTTCAAACAAGGCCTCGAACGACACATGCCCGTTCACGATCCCTCCCAAAAACCGCACGTTTGCGAAATTTGCAACGAAAGTTTCCACACGGCATCCAAATTGCAACAACATTTGCCCAAACACACCGGAAAACGACGATACGCCTGCAAATATTGCcccaaaaccttcattttatCGCATCATCTTTCGCGTCACGTTCGATCCGCACACAAATCTCTCGGAAATACATCGGTTccgaaaaaaatctacaattgCACGGAATGTTCGGATGTTTTTACGGATCACGAGGCTTTTATAGCGCACAGTGCGGAACATAcaacgcaaaatttaatttgtcccTTATGCAAACTCAAATTCGACAAGATGGAAGATGTCGATTTGCACATTGAGGAACATGCCCTTGCTTCGACCCATTATTCTTGTAACACTTGTAGCTGTGCTTTTCTGTCGGAGGAACTGCTGGAAAAgcattttaaggaaaatcaTTCGTTAACGGAGGAAAATGTGTATATTGTCGAGACAAAAGCGGAAGATGACGACGaaccaaaagttaaaaaagcgAAAATCGATGATGAAAGTTGTTTCAAAGTCCCAAAAGGGGTGACTATTAAGAAGAAATCCAAAtag
- Protein Sequence
- MANIAEKKMCRFCFEPDAKKLEDIFLQIPGKTPLAVQVMSCVSIEIFEGDEMPRFCCNICRKLMEVMHQYKQICRKSDILLKQSQITGNLTGNVFELPLKLLRECLPDEKKASKVTSDQSTMTEIPKKVDKATETMKKSQVTKETQTIEKKIVSKSEDLKKISIEKAPKSSQTTIKTHFLKKTPTAETKIVKKVEPKVEKVQPVTLVIENVVEGSPIEVQTSEEQIEILELTQDESEKLVEQPFLLNKCYEQTTSKPVIEFKKFVMTDNGNFEVEILEGIEGSNEKAIFSCDFCSKTYMIKQQLELHLETHFKERKFTCEKCQNKYLSKNDLVKHLQTHASERQHVCVVCDRSFARSGILKRHLLQHEEHLTFVCKKCPEKFVTDADLQKHVEFVHNKPRPFPCKLCDKSFAFKQGLERHMPVHDPSQKPHVCEICNESFHTASKLQQHLPKHTGKRRYACKYCPKTFILSHHLSRHVRSAHKSLGNTSVPKKIYNCTECSDVFTDHEAFIAHSAEHTTQNLICPLCKLKFDKMEDVDLHIEEHALASTHYSCNTCSCAFLSEELLEKHFKENHSLTEENVYIVETKAEDDDEPKVKKAKIDDESCFKVPKGVTIKKKSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -