Basic Information

Insect: Culicoides brevitarsis
Gene Symbol: -
Assembly: GCA_036172545.2
Location: CM070086.1:10759068-10761650[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.24 9.1 6.8 2.4 2 20 153 170 153 174 0.85

2 10 3.4e-05 0.0013 18.9 0.5 2 23 180 202 179 202 0.96

3 10 0.024 0.9 9.9 2.6 1 23 235 258 235 258 0.96

4 10 0.066 2.5 8.5 0.0 3 23 274 294 272 294 0.94

5 10 0.026 1 9.8 0.1 1 23 302 325 302 325 0.95

6 10 4.1 1.6e+02 2.9 1.7 1 19 330 348 330 353 0.76

7 10 0.0011 0.042 14.1 6.3 3 23 361 381 359 381 0.96

8 10 5.3e-05 0.002 18.3 0.1 1 23 387 409 387 409 0.97

9 10 0.00014 0.0054 16.9 0.6 1 23 415 437 415 437 0.97

10 10 0.0061 0.23 11.8 0.1 1 23 442 465 442 465 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.24	9.1	6.8	2.4	2	20	153	170	153	174	0.85
2	10	3.4e-05	0.0013	18.9	0.5	2	23	180	202	179	202	0.96
3	10	0.024	0.9	9.9	2.6	1	23	235	258	235	258	0.96
4	10	0.066	2.5	8.5	0.0	3	23	274	294	272	294	0.94
5	10	0.026	1	9.8	0.1	1	23	302	325	302	325	0.95
6	10	4.1	1.6e+02	2.9	1.7	1	19	330	348	330	353	0.76
7	10	0.0011	0.042	14.1	6.3	3	23	361	381	359	381	0.96
8	10	5.3e-05	0.002	18.3	0.1	1	23	387	409	387	409	0.97
9	10	0.00014	0.0054	16.9	0.6	1	23	415	437	415	437	0.97
10	10	0.0061	0.23	11.8	0.1	1	23	442	465	442	465	0.94

Sequence Information

Coding Sequence: ATGGACTCAACACCGGAAAATCCAGCAAAAAAGTGCCGAATTTGTCTGCAAGAGACATTCACAGGCATAATCTCGCTCCAAACGCCCGTTCCCTGCGAGACAGGCACTTATGCGGAGCTCTATGAGACTGTAACTGGCCTGACACCCGATCGGGGATCCCAATTCCTGTGCAAAACATGTACGGAAGACCTCCTCAGTTCGTACGAGTTCAAAAAACGCGTCGAGCACTGCGAAAAAGTCTGGGGCGTCGACATAAAATTGGAAGAAGTCGAGCCAAAAGTCACAGAAATTGAAGTGAAACCCGATGCAGAAGCTTTAGTCTTTGTTTCTACCCTGATTTCGGAAGCAGAAACAATTCCAGCTGTCAAAAGTGAGAGAATTCCCAACGAAAATGACTTTTCGTGGCAAGAAGACAGTTCCGACGAAACTTCTACGAAAAATTTCGACGATGAGGAAACTTGTCCGTACTGCAATGGCACGTTTAATGCCTCAAAATTACTGAAACACTGCAAAAATGTCCACAAAGGCGCAAAAATGAGTTGTCTCGATTGCCCGAAAGAATTCACAATTCCGTCACAGCTCGCGAAACATCGTCGTAAGAAACACGGAAGCAGCGATATTGACGGCAAATACGAATTAACGTTCCCCAATCGACGCGAATCTCCCCCACGAAGTACTGTCAAGCGAGAAAAACCAAAAACGTACGAATGTCCCTTTTGTTCGGAGATTTTTAACGTGAAACATCGGCTCGTGCAACACAAAAAACAGAAACATCCGGGTCAGAAACCCTCGAAGAGAGATCCGAATGAGCAAACAATCTGCCCGGAATGCGGAATTATGGTTTTTGTGCGTGCCCTGGAGCGACATCGACGCACGGCACACGATGCTAGTCCCCGAGAAACGTTCATTTGTGATTTGTGTGGCGCCAAACTCGTGTCCAAGGTAGGCATGAATATCCATATGCAGCTGAAACACTTGAATACGACGTTCTTTTGTCGACATTGCACGGAAAATTTTCCGACGCCGGGCATCAGGAGGACGCACGAGATTCGTTTTCACACGAAAAATTACAAGCATTTGTGCCATTTGTGCGATAAGAAGTTTATCACGGGCGTTCATTTGCGGAAACATTTGAATTCACACACGGGCGAGAAGAAATTTCCATGTGAGCAGTGCGGGATGAGGCTTTCCACGAAGGATGGGCTGAAAAGGCATGCAGCTACGCATTCAGaTGAACGTCCTTTCGCATGCGAAATCTGCGGATTGGGCTTCAAAACCGCTCATGTCATGCGAATGCACATGAAAAGTCACAAAGAATGGGATTACGAATGTCCCGTTTGTGGCCAAAAATTCCTGGTAAACCAAGCACTTCGTATCCACGTGACACGAAATCATCCGGAATACCAACTTCCTCCGCCGGGCACCGTCATGAACAAAAGCGCCCTCAAACGCATCCAAGAAATCAAGGAAAAATACGGAACGGATAACGTCACAGTCGCCATGCTGGGCACAAATCGCGGCAATCGACGAaatccgacgacgacgaataatCAGTCACATCAAACTTCTACATcacaaaatacttaa
Protein Sequence: MDSTPENPAKKCRICLQETFTGIISLQTPVPCETGTYAELYETVTGLTPDRGSQFLCKTCTEDLLSSYEFKKRVEHCEKVWGVDIKLEEVEPKVTEIEVKPDAEALVFVSTLISEAETIPAVKSERIPNENDFSWQEDSSDETSTKNFDDEETCPYCNGTFNASKLLKHCKNVHKGAKMSCLDCPKEFTIPSQLAKHRRKKHGSSDIDGKYELTFPNRRESPPRSTVKREKPKTYECPFCSEIFNVKHRLVQHKKQKHPGQKPSKRDPNEQTICPECGIMVFVRALERHRRTAHDASPRETFICDLCGAKLVSKVGMNIHMQLKHLNTTFFCRHCTENFPTPGIRRTHEIRFHTKNYKHLCHLCDKKFITGVHLRKHLNSHTGEKKFPCEQCGMRLSTKDGLKRHAATHSDERPFACEICGLGFKTAHVMRMHMKSHKEWDYECPVCGQKFLVNQALRIHVTRNHPEYQLPPPGTVMNKSALKRIQEIKEKYGTDNVTVAMLGTNRGNRRNPTTTNNQSHQTSTSQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -