Basic Information

Insect: Culicoides brevitarsis
Gene Symbol: -
Assembly: GCA_036172545.2
Location: CM070086.1:19837424-19839447[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.5 58 4.2 0.9 2 23 304 327 303 327 0.92

2 9 1.8e-05 0.0007 19.7 2.1 1 23 359 381 359 381 0.99

3 9 0.0024 0.093 13.0 1.8 1 23 389 411 389 411 0.97

4 9 0.00019 0.0072 16.5 0.5 1 23 420 443 420 443 0.95

5 9 8.7e-06 0.00033 20.7 1.8 1 23 451 474 451 474 0.97

6 9 0.11 4.4 7.8 2.1 2 23 482 503 481 503 0.97

7 9 0.00021 0.008 16.4 4.7 1 23 508 530 508 531 0.95

8 9 0.054 2.1 8.8 4.2 1 23 537 560 537 560 0.94

9 9 0.00037 0.014 15.6 3.6 1 23 568 591 568 591 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.5	58	4.2	0.9	2	23	304	327	303	327	0.92
2	9	1.8e-05	0.0007	19.7	2.1	1	23	359	381	359	381	0.99
3	9	0.0024	0.093	13.0	1.8	1	23	389	411	389	411	0.97
4	9	0.00019	0.0072	16.5	0.5	1	23	420	443	420	443	0.95
5	9	8.7e-06	0.00033	20.7	1.8	1	23	451	474	451	474	0.97
6	9	0.11	4.4	7.8	2.1	2	23	482	503	481	503	0.97
7	9	0.00021	0.008	16.4	4.7	1	23	508	530	508	531	0.95
8	9	0.054	2.1	8.8	4.2	1	23	537	560	537	560	0.94
9	9	0.00037	0.014	15.6	3.6	1	23	568	591	568	591	0.97

Sequence Information

Coding Sequence: atgacaaatatcgctaaaattatcacaaaagaCACCGTTTGTCGACTTTGTTTCGGCATTTGCAACGATTTGAGGGAAATCTTTGACGCCAACACCAAATATGCTGATCGaatatcgaaatttttgtatttacaattACCAAAAGACGATACGCTCTCTACAAAAATCTGCTGGAGTTGTGCAAATTACCTGGATATGTTCCAGCAGTTCTACACGAAAATCATCGATACACAAAAACATCACTTATCCACCAAATTTGACCAATATCTGCTCGAACCAGTGTTTATTGTGAAGAATTTCAGCAATTCCTGTACAAACGAAGTCGAAATCGCATGCAAAATACCGAATTTCTCGGATGCCGAAGTGATGGAAACACCACAAGAACAGGAAAAATCAGTTGAAAAGGaagttttaatagaaaaaacgGTGATCGAGACCCTTCCCGCACGAAAAACTCGTTCTAGCGTCATCAAAGAGCGAGAAAAGACGCCGGAACTGAGACCTGTGACAAAAACgtacaaaagaaaatcaagACAGAAGTCACCTGAACCAAAAGAAACACTTCCAGAAGTCGAATCTGAGCCTGAATTGTTTGACGAAGTACTTTCCGAAGACGAATACAAGCCTCCAACGCCTAAAAAACGAGTTTTAGCAGCCAAAGCAAAGATAGAAAAGCCCAAAGAGatcaaaatagtaaaaaaagaaactccTGTAAAGCCTCTGAGACAAGAAGATTACTCAATAATTGCTGTTGATGATCCAAATGCGTCCATAAATGACGTGAATTTCAGCGAAGAATGGCCCTCATCCGAGAGTTTTGAGAAATTTCCCAACAAAATTCTGGACGACGGTTGTTTGTTGATTCGTGGCAAGGAATTGAACGATCTTGtgagcaaatttttcaaactccAATGCGAAATTTGTAAGGAAAATGTCCGTTTCACCGACATTCGACAAATGTACAAACACTACAAGCAGCATAAAACTCCTGGTTTCGTTCGTTGTTGCGGCAATAAAATCGAGCATTATCGTGCTGCGGTATTGCATATGGCGCGTCACTTGCAACCGGAAGCCTTCAAATGTCACATTTGTAATTACATCGTCACCAGACCGAAATTTTTGGAAGTTCATATGAAGACTCACTTACCAGAGGATGAAAAACCCTTCGCTTGTCCGCATTGCCCGAAGAGATTTTGTTGGAAAGCCGCGTTTTCGGTTCATTTGGAGACGCACAAGTCCGAGGAGGAGCGAAAAACTTACATGTGTCACATGTGTCCCAAAGTGTATGACACGCCCGGAGGTTTGTCGACGCATAAGAAGCTCGTTCATCTAAAATACAAAGAAGAAAAGCACGTTTGTCACGTATGTGCAAAGTCCTTTGCCACAAAAACCGGCTTAAATGAACACATGAACACGATCCATCAACGCGAAAAGACTCAAGTGCAGTGCAAGGAGTGCGGAACGTGGCTGATGAACAAACGTTGTCTCAAAACTCACATGATGCTGCATTCCGATGTTGAACATCGTTGCAAGGAATGCGATTACACGACGAAAAAACCGTACCTGTTGACACGGCATGTCATCACCCATCACACGACCGAGACAAAATTCGAGTGTGACACGTGCCAGAAGAAATTCAAGCTGAAACGAGCTCTCACGTGTCACATTCAGCAAACGCATACTGAAGCTGCGAACAAGACGTACAAGTGTAATTTTTGCGAGAAAACTTTCGGGTCGTCGACGAATTTCTACACGCAtcggaaaaatattcatccgaAAGAGCTGGCAGCGATGAAACAAAAAGCGGAGGAAGAAAAACGACTCAAGAGGATCGAGATGGGATTAGAAGCGGAATACACAGTTATTGTCGATGGTGGGGAGAAAAATGATGGAGAAATGGTAGAACTTATAGAAGAAAATGATGGGGAGCAGATGGTAGTGTTagaattacaacaaaattaa
Protein Sequence: MTNIAKIITKDTVCRLCFGICNDLREIFDANTKYADRISKFLYLQLPKDDTLSTKICWSCANYLDMFQQFYTKIIDTQKHHLSTKFDQYLLEPVFIVKNFSNSCTNEVEIACKIPNFSDAEVMETPQEQEKSVEKEVLIEKTVIETLPARKTRSSVIKEREKTPELRPVTKTYKRKSRQKSPEPKETLPEVESEPELFDEVLSEDEYKPPTPKKRVLAAKAKIEKPKEIKIVKKETPVKPLRQEDYSIIAVDDPNASINDVNFSEEWPSSESFEKFPNKILDDGCLLIRGKELNDLVSKFFKLQCEICKENVRFTDIRQMYKHYKQHKTPGFVRCCGNKIEHYRAAVLHMARHLQPEAFKCHICNYIVTRPKFLEVHMKTHLPEDEKPFACPHCPKRFCWKAAFSVHLETHKSEEERKTYMCHMCPKVYDTPGGLSTHKKLVHLKYKEEKHVCHVCAKSFATKTGLNEHMNTIHQREKTQVQCKECGTWLMNKRCLKTHMMLHSDVEHRCKECDYTTKKPYLLTRHVITHHTTETKFECDTCQKKFKLKRALTCHIQQTHTEAANKTYKCNFCEKTFGSSTNFYTHRKNIHPKELAAMKQKAEEEKRLKRIEMGLEAEYTVIVDGGEKNDGEMVELIEENDGEQMVVLELQQN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -