Basic Information

Insect: Culicoides brevitarsis
Gene Symbol: -
Assembly: GCA_036172545.2
Location: CM070086.1:20565415-20567016[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.2 1.2e+02 3.2 0.0 3 17 95 109 94 110 0.92

2 9 7.4e-05 0.0028 17.8 1.2 2 23 227 249 226 249 0.96

3 9 6.5e-05 0.0025 18.0 1.0 2 23 255 277 254 277 0.96

4 9 0.21 8 6.9 0.2 1 23 314 337 314 337 0.94

5 9 0.003 0.12 12.7 2.2 1 23 342 365 342 365 0.94

6 9 5e-05 0.0019 18.3 1.8 1 23 371 393 371 393 0.95

7 9 6.3e-06 0.00024 21.2 0.8 1 23 399 421 399 421 0.97

8 9 0.0005 0.019 15.2 0.4 1 23 427 449 427 449 0.97

9 9 0.16 6 7.3 2.8 1 19 454 472 454 477 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.2	1.2e+02	3.2	0.0	3	17	95	109	94	110	0.92
2	9	7.4e-05	0.0028	17.8	1.2	2	23	227	249	226	249	0.96
3	9	6.5e-05	0.0025	18.0	1.0	2	23	255	277	254	277	0.96
4	9	0.21	8	6.9	0.2	1	23	314	337	314	337	0.94
5	9	0.003	0.12	12.7	2.2	1	23	342	365	342	365	0.94
6	9	5e-05	0.0019	18.3	1.8	1	23	371	393	371	393	0.95
7	9	6.3e-06	0.00024	21.2	0.8	1	23	399	421	399	421	0.97
8	9	0.0005	0.019	15.2	0.4	1	23	427	449	427	449	0.97
9	9	0.16	6	7.3	2.8	1	19	454	472	454	477	0.91

Sequence Information

Coding Sequence: ATGCTGCAGAATTCGCCATGGGACTCTAAAAAActtgtttacgttttttttttggaagagTTCCACGGAAAAATCTCTGAATTTTCACTGATTTGTGAGACACCTGGCTGCTACAAGATGCCAGAAGTAACGCCCGACAGCTGCCGCATCTGTCTCAATGAGCCACAATGGCCGATTTCGCTCAGCAGCACCTTTGAAGTTCTCGGAAAAGTGCATTCCTACACGGAGCTCTATCAGAATTTGTCGGGATTGGTTCTGGTCGGCACGGGACCTCAACGTTTGTGCAAGGGATGTGGCATGAATTTGGTTCAGGCGTACGAGTTAAAGATGAAAATCGAGGAGAGCGAAAGACTTTTGGGAACTCTGATCGAACAATCAACAATCATTGTTGGAGGAACGGAAAATGCGGATTTGATGATAAAGGAGGAAGAAGCGCCAATGGATTTTGATTTTGGGGCATCAGTGGTGGCAGAAGCGGTTGTGAAAGAAGAAATAGACGAGGAATTCAGGAAATCCGAAGATTCAGggggtgatgatgatgacgacgaataTACGGATGACGAGGAATCCACAACTGGCGAACACAACTTACGAAAACGACCGAAAAAGAAACTCGTTCCCGCAAAGAAACAACGAAAAACCAAAAGAACAAAGCAGGAACAGCAACCACTATCACTCGAATGCTCCATTTGCCTGAAGGTGTTTACGAAAAAGTTCGATTTTCGTAATCATTATCGAGTTTTGCATGCGCCGCAAGAAATTAAATGTCCAAATTGCACGCGAACCTTCACGGATGCCGACGAATTTGACAAACACGTGCGACACGGACACAAAAAACGGAATCGCGAAAAGACTTTGTGTCCGCACTGCGCCAAAGTTATGCTCAACACGTCAATTCAGGAGCACATCAAGAGTATCCACGAAGACAATCATCGCGAATATATCTGTGACTTGTGTGGCGTGCGTGCCAAGTCAAAAGACATCCTTACGGGTCACATGAAATTCAAACATCAGAATCTCACGTACAATTGTCGTTACTGCCCCGAAACGTTCAAGAACAAAGGAACGCGTCGCACCCATGAAATTCGCTTCCACACCTTCAACTACAAGCATATTTGCAACATTTGCGAGAAAAAGTTCATGACAAATGCGCAACTGAAGAAGCATCGTGTTATCCATACGGGCGAAAAGCCGCACAGTTGCGACATTTGTGGGCAACGCTTTTCGTTCAGGGCCGGTCTCAAAGACCATATGGCCACTCACGCCGAAACGCGAGACTTTGTCTGTGAAATTTGTacaaatgcatttaaaaacatgaaagcGCTGCGAAAACACAAGGCTGTGCACGAAGAACGGAACTACGAGTGCCCCGTGTGCGGACAGAAATTCTTAGAAAACAAAACACTGAGAGCGCATTGCAGTCACTCGCATCCGGAATATCAATTGCCGCCACCAGGAACGGTCATGAACAAAAAAGCACTTGCCCGAGTGGGGGAAATTCTCGAAAAGTATCACGTGCATGCACATCACTCAAGTGTCCCGCGGAAAATGAcatcaacaacgacgacgccgGGAGTTGCAGAGCAAACGACAAGCAACTGA
Protein Sequence: MLQNSPWDSKKLVYVFFLEEFHGKISEFSLICETPGCYKMPEVTPDSCRICLNEPQWPISLSSTFEVLGKVHSYTELYQNLSGLVLVGTGPQRLCKGCGMNLVQAYELKMKIEESERLLGTLIEQSTIIVGGTENADLMIKEEEAPMDFDFGASVVAEAVVKEEIDEEFRKSEDSGGDDDDDEYTDDEESTTGEHNLRKRPKKKLVPAKKQRKTKRTKQEQQPLSLECSICLKVFTKKFDFRNHYRVLHAPQEIKCPNCTRTFTDADEFDKHVRHGHKKRNREKTLCPHCAKVMLNTSIQEHIKSIHEDNHREYICDLCGVRAKSKDILTGHMKFKHQNLTYNCRYCPETFKNKGTRRTHEIRFHTFNYKHICNICEKKFMTNAQLKKHRVIHTGEKPHSCDICGQRFSFRAGLKDHMATHAETRDFVCEICTNAFKNMKALRKHKAVHEERNYECPVCGQKFLENKTLRAHCSHSHPEYQLPPPGTVMNKKALARVGEILEKYHVHAHHSSVPRKMTSTTTTPGVAEQTTSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -