Cbre003856.1
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- -
- Assembly
- GCA_036172545.2
- Location
- CM070085.1:35881055-35882984[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00023 0.0087 16.3 4.1 1 23 105 128 105 128 0.95 2 10 0.56 21 5.6 1.4 1 23 134 158 134 158 0.93 3 10 0.0003 0.011 15.9 0.9 1 23 164 186 164 186 0.98 4 10 0.00025 0.0097 16.1 0.4 1 23 192 215 192 215 0.98 5 10 0.96 37 4.9 2.4 1 23 221 244 221 244 0.96 6 10 9.5e-06 0.00036 20.6 2.2 1 23 249 271 249 271 0.98 7 10 1.2e-05 0.00046 20.3 0.1 2 23 279 301 278 301 0.96 8 10 2.6e-06 9.8e-05 22.4 1.3 1 23 307 329 307 329 0.97 9 10 0.00015 0.0055 16.9 2.3 1 23 335 359 335 359 0.96 10 10 0.032 1.2 9.5 2.3 1 19 365 383 365 386 0.94
Sequence Information
- Coding Sequence
- atgcAGTCGAAAATTGACTCTCCTTATTGTCAGGCATGCGGAAATGAGGTCCTTGCAGCACGAGTTTCTCCTGAAATGCAAGAAATCTTCAAAGAATTGACTCAAATTGAgCCCGTTGTCGCAGagcatgaaataattttttgtgatcaaTGTCAAACGTGTTTGGAGAATTTTCAGTCGTTTCGACAGATGTGTGATGAGACGCAGGCGATTTTAATGCAACGATATTGTACTAAAAACGACACCGAAGTAGTTGAAGAGTTCATCGTTGAAGCAATTAGTCCCGCTTCAAGTCACGAAGACGAACAAATATTCGCTTGTGATATTTGTGCCAAAAGattcaaaaccaaaaaatgcCTTGCGACGCACATGAACCACATTCACCTTGgaaaatctcattttatttGCTCCGAACTCGATTgccaaagaaaatttcagtcaaaaatcgCCCTGGATTGTCATCTGCGAGAACATGAAGGAAAACATCCGTTCGAGTGTCACATTTGTAATTTGCAACTGAATCGTTTGGATGCgctcaaaaatcatcttttgtcGCACGGAACTGAGCGCGCCTTCAAATGCTCGATTTGCGAAGCGGCTTTCACGAATGAGGCGAATCGCTATCAGCACATGATGTCGACGCATAAACTTGGGCGGAAATATATTTGTGCGTATTGTGCGTTTATTTGTCACAATGCGACGCAATTTAATGAGCACGTACAAAGACTTCATGGCAGCGAGGTGTTCCAATGTGATCAATGTGAGAAGAGTTTCAAGCATCCGAGGTCGTTGGCGGAGCATAAGGAGACGCATGACTTGATAGAGAGAATTTTACCGTGTCCTGTTTGTGGGAAAATGTTTAAGAAGAAACGGGATGTCACGATGCACGTGAGAATTGTGcataaaaaggagaaaaaacacaaatgtACGGATTGTGATAAAAGTTTTACCTTGTTGGGGCAGttgaaaaACCATCTTGCAGTTCACACAGGACAAAAACCATACGCTTGTACCTTTAACTTATGCACTCAGGCTTTCACACAGCTGCATGCCCTGAAAAGGCACATGACAACCCACACGGGCGAAAAACCATTTTCGTGCCCTTTTTGCGAGCATAAATTCGCGGAAAAGTATTATATGAAGAAACATGCTTATCGTTGCTCGATGAGACCGGAAAATGTCGAGTCACTTGAGGGAACTGATTGA
- Protein Sequence
- MQSKIDSPYCQACGNEVLAARVSPEMQEIFKELTQIEPVVAEHEIIFCDQCQTCLENFQSFRQMCDETQAILMQRYCTKNDTEVVEEFIVEAISPASSHEDEQIFACDICAKRFKTKKCLATHMNHIHLGKSHFICSELDCQRKFQSKIALDCHLREHEGKHPFECHICNLQLNRLDALKNHLLSHGTERAFKCSICEAAFTNEANRYQHMMSTHKLGRKYICAYCAFICHNATQFNEHVQRLHGSEVFQCDQCEKSFKHPRSLAEHKETHDLIERILPCPVCGKMFKKKRDVTMHVRIVHKKEKKHKCTDCDKSFTLLGQLKNHLAVHTGQKPYACTFNLCTQAFTQLHALKRHMTTHTGEKPFSCPFCEHKFAEKYYMKKHAYRCSMRPENVESLEGTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -