Cbre008850.1
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- Zfy2
- Assembly
- GCA_036172545.2
- Location
- CM070086.1:32292823-32296129[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.9 73 3.9 0.2 1 20 204 222 204 224 0.86 2 15 0.0017 0.063 13.6 0.4 1 23 235 258 235 258 0.97 3 15 2.5e-05 0.00095 19.3 0.7 2 23 264 286 263 286 0.97 4 15 2.5 94 3.6 1.8 1 23 293 315 293 315 0.97 5 15 0.0013 0.048 13.9 0.6 2 23 321 342 320 342 0.96 6 15 0.00089 0.034 14.4 0.5 1 23 348 370 348 370 0.98 7 15 0.0048 0.18 12.1 0.6 1 23 375 398 375 398 0.90 8 15 0.00035 0.013 15.7 1.8 1 23 604 627 604 627 0.95 9 15 6.8 2.6e+02 2.2 0.0 2 20 662 679 661 680 0.84 10 15 0.00086 0.033 14.5 0.1 1 23 694 717 694 717 0.97 11 15 0.0029 0.11 12.8 0.5 2 23 723 745 722 745 0.96 12 15 0.051 1.9 8.9 1.8 2 23 753 774 752 774 0.96 13 15 0.00015 0.0059 16.8 1.6 1 23 780 802 780 802 0.98 14 15 0.0003 0.012 15.9 1.0 1 23 808 830 808 830 0.98 15 15 0.008 0.31 11.4 1.1 1 23 835 858 835 858 0.97
Sequence Information
- Coding Sequence
- ATGCGAAAACGATCGAAAGTCTGGGACTCATTTAATGTTGACGGCGATAAAGCCTGTTGCAAGTTATGTCGAACAGTTGTGCGTCATTCGGGCGGCACATCAAATCTCATCAACCACTTAAGGATACACGAAGTGAAGAAAGAGCTAAAAACGGAAGAAATCATCGAAACATCAGAAAATGTCGAGGAAATGCCACAAAATATCGAGGAACTGGTCGAAGTTTATGAAACTGACGAGAGCGGAATGAAATTTGAAGAGGAattcttcacaaaaatttctggATTTGCGTTAAAGGATAACGAACCACATCGAATTTGCTCGAAATGTTGCCAAATATTGACTGACATGAAGAAATTAATCCTAAAAGCGGGCGAAAcgcaacaaaaattacaaaaaatattcgagtCAAAGACCAAAGCTGTCGTTAAAGATGCGAAAATTGACCAAGAAAGCGATTTTGAGGACGAACTAGACTCCTGGAACGACTTTAGTGAGCCCGAAAGTcctaaaaaactcaaaaagaaGGACTGTATTTACTGCAAACGGAAAATTACTGACCTGGATCGTCATTTGAAGTACTGCAAAAGTCGTCCTGTTGAGAAAGAATTGCACGTATGTCCCGTTTGCGGCATTTTAAGTACCTCCGATCACATTAAACGTCACACCAGTTCCCcgaaatcgaagaaaaaaccTGAAAACGTGTTCATTTGTGACATTTGTGGTCTTCATGTGACCTCCCGTTCCAACATTGACATCCACATGAAGGTCAAACACCTGAATATTCGTTCGCAATGTCGTCACTGCCCCGGTGCCTTCAACAATCCGAGTGCCTTAGCACGTCACATGCGCAAAAGTCACCCCGAATTGCTCAAAGACTACAAATGTCGGACTTGCAGCTTTCGTACTTCGGTGGAAAAAGAAGCGCGAAACCACCGAGAATCGCATCGCTTGAAGAAACTCGTGTGTCATTTGTGTGGGCAAGCATTTTTGAAGCCAACCAACTTGAAATATCACATGGCATCGCATTCCGATGAGCGTCCCTATTCGTGCGACACTTGCGGATCGGCTTTTAAAACGACAAAAGCCTTGGGCGCTCACAAGAAAACGCATAAAGCGTACGATTATGAGTGTCCTGTGTGTGGCAGGAGCTATTTGACGAACCAATTGATGCGACATCACGTCGAAAAGATACACAAAGAGTATGAATTGCCGCCCCCGGGAACCGTTTTCAGCAAAAGTTACATTCAAAAGATGAAGGAACGCAAAATTCAGGAGTTGGCGATCAAGCAAGGCGTGGATGTCAATGAAATTCCGACGGAAATTGTACCGGAAATTGTAATTCCGCCCGTTCAGAGATCCGTTCACttttCGACAACAACCCCTCCGATCTCCCCGTGGAAACATTGTAACAACCTCACATATGCCGAAATATTCACGGAATTCTCTGGTTACGACATAATTTCGCAAGAACCTCAATACTTTTGTGCCAAATGTACCAAAAAACTCGTTTCTTTCTACGAACTCAAACAACGGTGCAACGAAACGCAGGAAATTCTCGAAGAATGGATCAAAAACGAGCAGGAAATGTTACAAGCAGAGGATGTTTTGGCagtttctgaagaaaaaattgaagaaactcCCACGGAAAGCAACATTGACTACATTATCGAAGAAGTTGAGGACGAAGatcaactttttaatgaacCACAATCCGTTGATGTCGAATACGAACAAGTCGAAAATCTCAATGAGGCAtcgaaaaactcaatttttcgtGTTCCGGATAACGTACAAGTGCTCGAAGAATGTCACGACTGCGAAATTTGCAACATTTCGTATCGCACAAGACGCGCATTGCGTGTTCATTACCGTCAAACGCACCCAGAATTGAGAAATATCGATTGTCCCCATTGCGAAATTCAgcaatttccaatttttctcgAGGATCACGTTGCGCGCTGCAAAAAAGCGAATGTTCCGTCGCCGTGTGAGATTTGTGGCGTTGTCATTAAGCGTGTAAACATGACGCGTCATCGGATTGCGTGTCGCATTTCAAGTCGTCATCCCGCCGAAAAGCCTTTCCAATGCGATATTTGCGGCGTTCGCACCGTCGCCAAATACGGACTTGTCAAACACATGCAAATCCAGCATCTGAATCGTCGGTTACGCTGCAAAATTTGCTTCGCGGAATTCAAGACGCCCAGCGTGTACAGCGCCCATCTTCGAAAATACCATCCGGAGAAAAAACCGCCTCTCAGATGCAAAATTTGCGATTTTCAGACGACAGAGGCTTCCGTGCTGCGACGCCATCACTTGTATCACACGGGCGAGAAGCGACACAAGTGCGAAACGTGCGGCAGAGAATTTCGGGCGAAAGACGTGTTACGGGATCACATGACGACGCATTCCGATGAGCGGCCATTCCCGTGCGAAACGTGCCAATCGCGGTTCAAGACACGAAAAGCACTTGGGGTGCACATGAAAACGCATCGGGCGCACGAATACGAGTGTCCAAAGTGCAAAAGAACGTATTTGACGAACCAGCAAATGAGAATTCACGTCAAACGGGTACATCCGGATTATGAGTTGCCGCCGAAAGGAacgattttcaacaaaaattggaGAATCAAGAAGGCTCGAGAGGAAATTAAGGAAATGGCGGTTAAGGAAGGGTTTGATGCGTCGGTTGTGGATAACATCATGATTGAAGAACCGCCCTCGATTgatcagaaaatttatattcgcACGAATTATTCGACCGTTGGATTGATTGAAGAgctttaa
- Protein Sequence
- MRKRSKVWDSFNVDGDKACCKLCRTVVRHSGGTSNLINHLRIHEVKKELKTEEIIETSENVEEMPQNIEELVEVYETDESGMKFEEEFFTKISGFALKDNEPHRICSKCCQILTDMKKLILKAGETQQKLQKIFESKTKAVVKDAKIDQESDFEDELDSWNDFSEPESPKKLKKKDCIYCKRKITDLDRHLKYCKSRPVEKELHVCPVCGILSTSDHIKRHTSSPKSKKKPENVFICDICGLHVTSRSNIDIHMKVKHLNIRSQCRHCPGAFNNPSALARHMRKSHPELLKDYKCRTCSFRTSVEKEARNHRESHRLKKLVCHLCGQAFLKPTNLKYHMASHSDERPYSCDTCGSAFKTTKALGAHKKTHKAYDYECPVCGRSYLTNQLMRHHVEKIHKEYELPPPGTVFSKSYIQKMKERKIQELAIKQGVDVNEIPTEIVPEIVIPPVQRSVHFSTTTPPISPWKHCNNLTYAEIFTEFSGYDIISQEPQYFCAKCTKKLVSFYELKQRCNETQEILEEWIKNEQEMLQAEDVLAVSEEKIEETPTESNIDYIIEEVEDEDQLFNEPQSVDVEYEQVENLNEASKNSIFRVPDNVQVLEECHDCEICNISYRTRRALRVHYRQTHPELRNIDCPHCEIQQFPIFLEDHVARCKKANVPSPCEICGVVIKRVNMTRHRIACRISSRHPAEKPFQCDICGVRTVAKYGLVKHMQIQHLNRRLRCKICFAEFKTPSVYSAHLRKYHPEKKPPLRCKICDFQTTEASVLRRHHLYHTGEKRHKCETCGREFRAKDVLRDHMTTHSDERPFPCETCQSRFKTRKALGVHMKTHRAHEYECPKCKRTYLTNQQMRIHVKRVHPDYELPPKGTIFNKNWRIKKAREEIKEMAVKEGFDASVVDNIMIEEPPSIDQKIYIRTNYSTVGLIEEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -