Cbre008244.1
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- -
- Assembly
- GCA_036172545.2
- Location
- CM070086.1:27810213-27812600[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.018 0.68 10.3 0.8 3 23 35 56 33 56 0.95 2 18 0.002 0.076 13.3 1.9 2 23 62 82 62 82 0.97 3 18 0.00012 0.0048 17.1 0.5 1 21 86 106 86 107 0.94 4 18 0.068 2.6 8.5 4.2 1 23 123 146 123 146 0.98 5 18 4.5 1.7e+02 2.7 1.0 1 9 151 159 151 170 0.76 6 18 0.011 0.42 11.0 5.7 2 23 178 200 177 200 0.89 7 18 0.0042 0.16 12.3 0.3 1 23 286 309 286 309 0.96 8 18 0.00079 0.03 14.6 0.5 2 23 315 335 314 335 0.97 9 18 0.047 1.8 9.0 0.1 3 21 341 359 340 360 0.93 10 18 0.016 0.62 10.4 3.4 1 23 383 406 383 406 0.96 11 18 0.0028 0.11 12.8 0.3 2 23 414 434 413 434 0.97 12 18 0.0004 0.015 15.5 2.6 2 23 438 459 437 459 0.96 13 18 0.0074 0.28 11.5 0.4 1 23 478 501 478 501 0.97 14 18 0.98 37 4.8 2.5 1 23 506 530 506 530 0.90 15 18 2.6e-05 0.00099 19.2 0.1 1 21 534 554 534 555 0.96 16 18 0.058 2.2 8.7 0.3 1 23 629 652 629 652 0.95 17 18 0.51 19 5.7 1.3 3 23 659 681 658 681 0.88 18 18 0.014 0.55 10.6 0.6 1 23 752 775 752 775 0.97
Sequence Information
- Coding Sequence
- ATGGAACCAACATCAGAAATCGTCCTTGTTCAGTACGAAAATGGCACTTTGAAGCTCTTACCTGACAAAAATCCCGTCGAATATCCTCCGGACACGATGTTTTGCGATTTATGCGACTACCGAACGGCAAAACGAAAACTTTTGATTCAGCACATGACGAGCAATCACTTTACCGCCGACCGGGAATGCAAGATTTGTGGGAAAAGGTTGAATAAGATGCAGTTACGGCTTCATATGAGGTTTCATGATTTGaagttcgTTTGTGATTTTTGCGGGAAACGCTTTGGTGACTCAAAAGCCttgaaaaaccacaaaaatagTCGATTTTGCGgcgaaaaattacaagaaacgATTTCCACGAAGACTTTCAAGTGCGATTTCTGCGAATATCGAACTCATACGGCGAAATTACTCATGACACACTTTCGAACGTTGCATGTTCCCAAAGACCATCAATGCCCAACGTGCCATAAAGAGATGACGGCGAAGCAATATTACGCCCATAAGAGCCATTGCAACCAAGAAATGGTTTCCTGTGACTTTTGTGGCAAAAAATTCTCGAGTCAGAAGTATTTCAAGACGCATTGTCGACAAAAACACCCCGAAAAAGTGCTTGAAACATCTCAAAAAGTCGAAATTGTCGAAGAAACGCacgaaaaatcggaaaatttggaaatgatGACTTACGAAATCGTCCCTGTCGCAACGGAAAATCTCAAAATCGAAGCCGaggagaattttttgatcgaaGAAGTGGTCGAAGAAGACGAAAATTTGGCTGACGAGTACAcagaaatcgaaaaattagaCGAAACTGAGGAAAACTTCTTCGAAAACGCAGAAACTGTCATCCATTATCAATGCACGATCTGTTCCCTGAGCATCCCAAACATTGACGAGCTCGTGAAACACATGAACGATTGTCACAACGACGTAAATAGTGAGTGCCCGCTTTGTCAGAAACTTTTTACTGCTCAAGGACTGCAGCGGCACATGCGATATCACGAAAAATCGAACATTTGTACGAAATGTGGACACGGATTTGCTGAAATTTGGCAGTTAAAAGCCCATTTAGAGCGAAAAATCTCATGTCTTGGTCCAACAATTGAAGATTTGCAGCAAGATCCGACTTATATGTCGAAAGAATTCGCTTGTGAACATTGTCTTTATCGAGGCGCCACGAAAAATCATCTTTCCCGGCATATAAGAAATAATCATTTTGACACCCCGAAAGACATTGAGTGTCCCGATTGTGGAAAAATTCTCTCAAAATTGCAATTTCAAGCTCATAAGAGGACTCATGTGAAGGTAAAATGCGATATTTGTCACAAAATCTTCAcgaattctaaatttttcaagattcaTTTGGAAAATCATGCGAAACCGAAGGAAAATTTAGCGAAAATCCCCGAGAAACCGACAGAAAAGGGGTTTGAGTGTCCCGAATGtggatttttgacgaaagaaAGGCGATTTTTGGTGCAACATATGAAAGTCAATCACGCTCCCAAAGACTTTGAATGCGAATTTGACGAATGcaaaggcaaaaaattcacaaaaacgcAACTTCGGCTCCATCGGAGGTTCCATACGTTGGCATTCAAGTGCGAAAAATGCGGCATTGGCTTCCCGGACAATCGAGATTTGAAGAGACACTTAAACGGGAAGAAATGCGGGCAAGAAAGAAAGTTACGAACGACAGGAGATAAAGATAAAACcacgaaaaaagttaaaattgaaccaaaaaatgacgaaattttGATCGAAGAAGTCATAAATCCCCCAGAAATCGATGAAATTTCGCAAATGACCCCCGTTGAAGACCCTCCCGTCGAAATCGAAGTCCATCCACTCGTGAATTCCGCACCAAATGACCTGGGAATCTTCGAATGTGACAGCTGCAACTTTGAAACTGACGATAAAGACGAGCTAATGGAACACTGGAATCAATTTCATGCACCGCGAGATCAACCTTGTCACGAACCGCAATGCAAGGGAAAGCTTTTTAGTAAGGCGCAGTTGAAGGTTCAcatgaaatttcatcaaaaaagtgagaaaatgggaccaaaattgacaaaagacaagaaaagtcGACTGAAAATTGTGATGGATGGGGATTTCCCGGCGGAAATGGCAGAAAATTCGTGGGTTTTTAGCTGTAAAGAGTGTGAATTTGTGACTgggaagaaagaaattttcgacCAACATCGAAAGAAAAGGCATGAAAAGCAACAGAAAGTAGTGAAAACAGTTTTTCAGTGTAGCGAATGTGATTTTGAGACAAATAAGGAGATTTACTTGCAACAACATGTTCAAATGAATCATGAGAGTTaa
- Protein Sequence
- MEPTSEIVLVQYENGTLKLLPDKNPVEYPPDTMFCDLCDYRTAKRKLLIQHMTSNHFTADRECKICGKRLNKMQLRLHMRFHDLKFVCDFCGKRFGDSKALKNHKNSRFCGEKLQETISTKTFKCDFCEYRTHTAKLLMTHFRTLHVPKDHQCPTCHKEMTAKQYYAHKSHCNQEMVSCDFCGKKFSSQKYFKTHCRQKHPEKVLETSQKVEIVEETHEKSENLEMMTYEIVPVATENLKIEAEENFLIEEVVEEDENLADEYTEIEKLDETEENFFENAETVIHYQCTICSLSIPNIDELVKHMNDCHNDVNSECPLCQKLFTAQGLQRHMRYHEKSNICTKCGHGFAEIWQLKAHLERKISCLGPTIEDLQQDPTYMSKEFACEHCLYRGATKNHLSRHIRNNHFDTPKDIECPDCGKILSKLQFQAHKRTHVKVKCDICHKIFTNSKFFKIHLENHAKPKENLAKIPEKPTEKGFECPECGFLTKERRFLVQHMKVNHAPKDFECEFDECKGKKFTKTQLRLHRRFHTLAFKCEKCGIGFPDNRDLKRHLNGKKCGQERKLRTTGDKDKTTKKVKIEPKNDEILIEEVINPPEIDEISQMTPVEDPPVEIEVHPLVNSAPNDLGIFECDSCNFETDDKDELMEHWNQFHAPRDQPCHEPQCKGKLFSKAQLKVHMKFHQKSEKMGPKLTKDKKSRLKIVMDGDFPAEMAENSWVFSCKECEFVTGKKEIFDQHRKKRHEKQQKVVKTVFQCSECDFETNKEIYLQQHVQMNHES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -