Basic Information

Insect: Culicoides brevitarsis
Gene Symbol: -
Assembly: GCA_036172545.2
Location: CM070086.1:33922525-33924787[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.063 2.4 8.6 3.7 3 23 22 42 21 42 0.95

2 14 0.0002 0.0078 16.4 2.6 1 23 47 70 47 70 0.98

3 14 0.00026 0.0098 16.1 3.5 1 23 110 132 110 132 0.98

4 14 0.0023 0.088 13.1 0.9 1 23 136 158 136 158 0.96

5 14 0.00047 0.018 15.3 2.4 2 23 184 206 183 206 0.96

6 14 0.16 6 7.3 3.7 1 23 397 421 397 421 0.91

7 14 0.17 6.3 7.3 2.1 2 23 457 478 457 478 0.96

8 14 0.62 24 5.5 1.6 2 20 485 503 485 506 0.92

9 14 0.00057 0.022 15.0 0.2 2 23 513 535 513 535 0.96

10 14 0.00019 0.0073 16.5 0.3 2 23 549 571 548 571 0.95

11 14 9.8e-05 0.0038 17.4 2.5 2 23 579 600 578 600 0.96

12 14 4.1e-07 1.6e-05 24.9 1.2 1 23 606 628 606 628 0.97

13 14 2.2e-06 8.4e-05 22.6 2.2 1 23 635 657 635 657 0.98

14 14 0.00011 0.0043 17.2 1.2 3 23 665 686 663 686 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.063	2.4	8.6	3.7	3	23	22	42	21	42	0.95
2	14	0.0002	0.0078	16.4	2.6	1	23	47	70	47	70	0.98
3	14	0.00026	0.0098	16.1	3.5	1	23	110	132	110	132	0.98
4	14	0.0023	0.088	13.1	0.9	1	23	136	158	136	158	0.96
5	14	0.00047	0.018	15.3	2.4	2	23	184	206	183	206	0.96
6	14	0.16	6	7.3	3.7	1	23	397	421	397	421	0.91
7	14	0.17	6.3	7.3	2.1	2	23	457	478	457	478	0.96
8	14	0.62	24	5.5	1.6	2	20	485	503	485	506	0.92
9	14	0.00057	0.022	15.0	0.2	2	23	513	535	513	535	0.96
10	14	0.00019	0.0073	16.5	0.3	2	23	549	571	548	571	0.95
11	14	9.8e-05	0.0038	17.4	2.5	2	23	579	600	578	600	0.96
12	14	4.1e-07	1.6e-05	24.9	1.2	1	23	606	628	606	628	0.97
13	14	2.2e-06	8.4e-05	22.6	2.2	1	23	635	657	635	657	0.98
14	14	0.00011	0.0043	17.2	1.2	3	23	665	686	663	686	0.96

Sequence Information

Coding Sequence: atgttggaaatgACTGAGGAATTCGAGGAAAAGGCTCTTTCGGAGGAGACAGATGAAAGAATTTGTCGTTACTGCCACAAAACGTTCAAAAATGCGACAATTCGGAAGAGACATGAGAGAATTCATACTGATgaggctTATCAGTGTCACATTTGCTCCAAAAGGATCGCCCAGAAGAGTCATTGGGTCGAACACATGCAAAAAGTGCACCAACAAACGCCCGAAGAGGTGCCTGTGAGACCTTTGAAGCAAGAACCCATCATCGAGGAAGCCGATCCAGCATCTCCTACGACCCAAGATGACAAATTTACCTTCCTCAATGGCAAATATTACTGCGGCTTTTGTCCAAAATCGTTTCATACGCGCTCCACGATCCGGCGACACGAACGCGTTCACATCAACCCCTTCATTTGCGACTATTGCGGCTTCAAAAGTGGCTCAAAATGGCATTTGCGCGATCATTTGATGGGTCACACGCGATTAATTGACCCGAATCAGAAGCTGGTCAAAGGTCGCAACAATGCGATACGCAAAAAATCCAGCAGAATCTATTGCGACGACTGCGGAAGGTATTTTTACTCGGAACACGACTTGAATTCGCACAAAAAACGACGCCACACTTTAAAAATCGACAAAGGAAGCGATCTTGGGATGTTATTTGAGCTGTTCGGACACGAAAATGAGATCAAAGAACTGAATCCGGCAGTCGATTTTGTGCATTTCGACGACGAACCGTCGGAAAATTTAATCACGGAGGTCTTTGTGAAGGAAGAACCCATGAATTCGGAGTTTTTGGATCCGGATTTGTTTGGAATGAGCACCAACGGCGACATTGACGGCCTTTATCGATGCAGTTGTGGCGAAAAATTTGCCCGTTTTGTCGATTTAGCGTTCCACGAAAGTCAATTTCATGCGGATTCCTTCAAAGAATGCGTTGATTCCATGCGAGATGTGCTTCTAAAGCTCTTGAATGTCGAAATTCATGcggaaattgacgaaaaagaCGTTccaaaagttgaaattatgGAAGATCGGAGACCAGAAACGTACCAAGATCTCATCAGTCGTAACATAAATGTCGAATGCATCTTTTGTCAAGCTTCCATCGTGGCTCTTTCGTACGACGAACACTTAAAACAAGCACATCCCATGGAAAATCCCGTCGATGCACGTCTCCAAACGCAAAAATATTGCTGCAATTGTTGTTTGAAGACCTTTAAAAACCTTCTGGCGCTCGTTAAGCACATTCGTTCGGCGGATCATCAACTCGAAGGCACCTCTTGTGACATTTGCACGTCAGATAATTACGCGACGTTGCAAGAACTCAACAGTCATCGTCTCGCGGCGCACCAAAATAAGGCAATTCCCACGTGCGAACAGTGccaaaagacatttttgagTAATCGACTGCTGAAATTTCACATGTTGAGTCATAAGGGACTCAAAGCGCGTCGTTGCAAGTTCTGCGGatgcaaatttttgagtcaGGAGGCGCTGGATCGACATTTGCCGGTGCATGAAAACGAAGCGACGCGTGTTTGTCCCACTTGTGGATTGGAGTTtagggGACGAGAACCTTTGCGACAACACATGAAGAACAGACACGGAGTTAGTAAGTCTGGATCCGCGTCGCAACCGGAGATCATGTGTACAACTTGCGGAATGGTCTTTAAAGGCAAAGATCGGTTAAGGAGACATTTGGCGCGAGTGCATTTggaaagaattttcaatatcGAGTGTCAACATTGCTCCAAAAAATTCGATTCcaaacacGATTTGGCAAAACACATCGTCGTTCACTCAAAAGAGATCAAATTCTTTTGCGAAGTATGCGATAAGGGTTTTACGCGGAAGCAATCTCTGAATCGGCATATAAAAGTACACGATGAATCAACGAAGGTGTTTACTTGTACATTTTGCCCGAAGACTTTTCGCAGTGCAAGTAATCAGAAAAGGCATATTATGTCACATACgggcgaaaaaaatcaaatttgcaCGGAATGTGATGCGAGTTATGCGGATCGGAGCTGTTTGAATAAACATATGGAAAGAACGCATGGGCATGGACTGCCCGGGTATCAGAAAATGACtggaaattaa
Protein Sequence: MLEMTEEFEEKALSEETDERICRYCHKTFKNATIRKRHERIHTDEAYQCHICSKRIAQKSHWVEHMQKVHQQTPEEVPVRPLKQEPIIEEADPASPTTQDDKFTFLNGKYYCGFCPKSFHTRSTIRRHERVHINPFICDYCGFKSGSKWHLRDHLMGHTRLIDPNQKLVKGRNNAIRKKSSRIYCDDCGRYFYSEHDLNSHKKRRHTLKIDKGSDLGMLFELFGHENEIKELNPAVDFVHFDDEPSENLITEVFVKEEPMNSEFLDPDLFGMSTNGDIDGLYRCSCGEKFARFVDLAFHESQFHADSFKECVDSMRDVLLKLLNVEIHAEIDEKDVPKVEIMEDRRPETYQDLISRNINVECIFCQASIVALSYDEHLKQAHPMENPVDARLQTQKYCCNCCLKTFKNLLALVKHIRSADHQLEGTSCDICTSDNYATLQELNSHRLAAHQNKAIPTCEQCQKTFLSNRLLKFHMLSHKGLKARRCKFCGCKFLSQEALDRHLPVHENEATRVCPTCGLEFRGREPLRQHMKNRHGVSKSGSASQPEIMCTTCGMVFKGKDRLRRHLARVHLERIFNIECQHCSKKFDSKHDLAKHIVVHSKEIKFFCEVCDKGFTRKQSLNRHIKVHDESTKVFTCTFCPKTFRSASNQKRHIMSHTGEKNQICTECDASYADRSCLNKHMERTHGHGLPGYQKMTGN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -