Basic Information

Insect: Culicoides brevitarsis
Gene Symbol: -
Assembly: GCA_036172545.2
Location: CM070086.1:30969932-30971317[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.8e-06 0.00011 22.3 2.4 1 23 8 30 8 30 0.96

2 15 0.57 22 5.6 4.3 2 23 43 64 42 64 0.96

3 15 0.0084 0.32 11.3 1.8 2 23 68 89 68 89 0.97

4 15 0.43 17 5.9 1.6 1 23 94 117 94 117 0.81

5 15 2 75 3.9 1.1 2 23 125 146 124 146 0.85

6 15 0.016 0.61 10.5 0.4 2 23 153 175 152 175 0.90

7 15 4.9e-05 0.0019 18.4 4.1 1 23 181 203 181 203 0.99

8 15 0.00019 0.0073 16.5 0.5 2 23 241 262 240 262 0.98

9 15 1.3e-05 0.00048 20.2 0.3 1 23 267 290 267 290 0.96

10 15 0.96 37 4.9 0.5 2 23 298 319 297 319 0.89

11 15 2.2e-05 0.00085 19.4 0.4 1 23 325 348 325 348 0.94

12 15 7.3e-07 2.8e-05 24.1 1.2 1 23 354 377 354 377 0.98

13 15 9e-05 0.0034 17.5 1.8 2 23 384 405 384 405 0.96

14 15 0.022 0.84 10.0 0.7 1 23 410 435 410 435 0.93

15 15 0.00034 0.013 15.7 0.8 1 23 438 461 438 461 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.8e-06	0.00011	22.3	2.4	1	23	8	30	8	30	0.96
2	15	0.57	22	5.6	4.3	2	23	43	64	42	64	0.96
3	15	0.0084	0.32	11.3	1.8	2	23	68	89	68	89	0.97
4	15	0.43	17	5.9	1.6	1	23	94	117	94	117	0.81
5	15	2	75	3.9	1.1	2	23	125	146	124	146	0.85
6	15	0.016	0.61	10.5	0.4	2	23	153	175	152	175	0.90
7	15	4.9e-05	0.0019	18.4	4.1	1	23	181	203	181	203	0.99
8	15	0.00019	0.0073	16.5	0.5	2	23	241	262	240	262	0.98
9	15	1.3e-05	0.00048	20.2	0.3	1	23	267	290	267	290	0.96
10	15	0.96	37	4.9	0.5	2	23	298	319	297	319	0.89
11	15	2.2e-05	0.00085	19.4	0.4	1	23	325	348	325	348	0.94
12	15	7.3e-07	2.8e-05	24.1	1.2	1	23	354	377	354	377	0.98
13	15	9e-05	0.0034	17.5	1.8	2	23	384	405	384	405	0.96
14	15	0.022	0.84	10.0	0.7	1	23	410	435	410	435	0.93
15	15	0.00034	0.013	15.7	0.8	1	23	438	461	438	461	0.95

Sequence Information

Coding Sequence: ATGACCGAAGTAGCTGTGACAttcatttgtgatttttgtcaGAAACAGTTTTCAAGTAAAAGTAATTTGCAAACGCACATGGAATTTCATTTGAGTGAACTTATCAAAGATCATCCAGACAGCAAAAAGTGCAAACACTGTCCgagatttcttttaaaagaaaatttgagagaACATTACCAGAAAAATCACAAGCCACGAAAGTGCAAGGTCTGCGGAAAAATTTACTACAACAAATCACCATTTTACTTTCaccaaaaaacacacaaagaaCCACAGTTTACTTGCGACATATGTGGACATAAAACTTTCACAAAGCTCATAATAAAGACTCACATGCAATCTATTCATCTGAAAAATGTTCCTCGATCGCAGTGTGaattatgtaataaaatgGTCATAACCTATAAAATGAAAGCTCACATTCGGCACGTTCATGAAAAACAATACAAACTAAAATGTGTTCTTTGCGACAAAGGATTTCAACTTTCAAGAGACTTACGAGATCACCTGGCATTTAGACATTTAGACCAAAAACTATACAAATGCtcaatttgtggaaaaaactTTACATGTAAATTTAGTTTGGtaaatcacataaaaactCATGAGAATAATCTCATGAAAGACAATCCAGAAAGTAAGAAAtgtaaatattgcaaaaaattcgttttgaaAAAGGACTTGAGGGAGCATTGCTTAAAGCAGCATAAACCACAAAAGTGCGAGGAATgtggaaaaatttacttcaacaAACTATCATTATTGGCACACGAAAAAACGCACAAAGGTCAAAAGTATATTTGCGACATTTGTGGAAAGGAGATATCAACAAAGCCCCATTTGAGAAATCACATTAATAACATTCACTTGAAAAATGATGCTCGATCGCAGTgtgaattttgtgataaaatgataaaaaacatTCGAATGAAAAATCACATTCGGATTGTTCATGAGAAAAACTACAAATATGTTTGTACTGTTTGTAAAAGAGGCTTTAGCACCTCGACAGACCTACGAGATCATTTAGCCTTGAgacatttggagcaagagCTTTACAAATGCTCGATTTGTGATAAATCGATCCGTTCTAAACGTGATTTGAACAGGCACATAAAGAGAGTCCATGAACGTGTAGTTGTCGCAACATGTCATATATGCGGATTTGaatttcgagataaaaaaGCATACAGAAAACATTTAGCACTACATGAGAAAAAGCCCTTCAACTGCAATCAGGATTCATGCTTTGAAATGTTTGAATCAGaaaaagctttgaaaaaaCATCTTTCCAAGCCCCATATAAAGTACAATTGTGAGCAATGTGATAAAACCTATTTTGCTGCCAGTTCTTTACGGAATCAcgttaaagaaaaacattaa
Protein Sequence: MTEVAVTFICDFCQKQFSSKSNLQTHMEFHLSELIKDHPDSKKCKHCPRFLLKENLREHYQKNHKPRKCKVCGKIYYNKSPFYFHQKTHKEPQFTCDICGHKTFTKLIIKTHMQSIHLKNVPRSQCELCNKMVITYKMKAHIRHVHEKQYKLKCVLCDKGFQLSRDLRDHLAFRHLDQKLYKCSICGKNFTCKFSLVNHIKTHENNLMKDNPESKKCKYCKKFVLKKDLREHCLKQHKPQKCEECGKIYFNKLSLLAHEKTHKGQKYICDICGKEISTKPHLRNHINNIHLKNDARSQCEFCDKMIKNIRMKNHIRIVHEKNYKYVCTVCKRGFSTSTDLRDHLALRHLEQELYKCSICDKSIRSKRDLNRHIKRVHERVVVATCHICGFEFRDKKAYRKHLALHEKKPFNCNQDSCFEMFESEKALKKHLSKPHIKYNCEQCDKTYFAASSLRNHVKEKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -