Cbre005052.1
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- SPAC25B8.19c
- Assembly
- GCA_036172545.2
- Location
- CM070086.1:1412054-1415014[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.1e-05 0.0023 18.1 0.1 1 23 222 244 222 244 0.98 2 14 0.00031 0.012 15.8 1.0 1 23 250 275 250 275 0.96 3 14 0.55 21 5.6 3.1 1 23 324 345 324 345 0.95 4 14 3e-05 0.0012 19.0 0.7 1 23 351 374 351 374 0.98 5 14 0.00084 0.032 14.5 0.8 1 23 437 458 437 458 0.98 6 14 0.00052 0.02 15.1 0.1 1 23 464 489 464 489 0.91 7 14 0.0046 0.18 12.2 1.6 3 23 528 547 526 547 0.96 8 14 0.001 0.04 14.2 0.6 1 23 552 579 552 579 0.93 9 14 0.015 0.56 10.6 5.2 2 23 592 612 591 612 0.95 10 14 0.0048 0.18 12.1 0.0 1 23 618 643 618 643 0.91 11 14 0.0026 0.098 13.0 3.0 1 21 649 669 649 670 0.93 12 14 0.051 2 8.9 3.3 2 23 678 698 678 698 0.97 13 14 4.9e-05 0.0019 18.4 0.2 2 23 705 728 704 728 0.94 14 14 0.00018 0.0068 16.6 1.4 1 23 734 757 734 757 0.97
Sequence Information
- Coding Sequence
- ATGGAAACTCGAAAGCAATCGCATCAGTGCGTTTGTTGTCTCACAAAGAACGATTTGACAGTGCTGGATGcggaaaaacgaaaaactcTCAGCTCATTTCTCCGTGTTTCAGCCAAAAAGTTCTCCGAGTCTCGGATTTGCATCAATTGCAACAGCACTCTTTCGTGCGTCGATCGATTTCGGCAAAACGCGTTATGGGCTCAAACGATTTTGGACCGATGCAAGCTGAAAAACAGCTTTTTGAGCAGCGTAACTGACGAATCTGTGAGTTCGTCGTTTGACTCGATCCTCAATTGGATGAACGATGTCACAGTAATTCTGAAATATTACATGACGGATCTGAAGGAGGAGATAAAAATTGCCGAATATGAGGAGGACGAGGAAATTGAACATGAAGAAGAGCTTTTTGTGGGAAGTGTCGACGAGGGAAATATCAAAAAGGAAGTTATGGAAGTCGAAGCGTTGGAAGAAGTTGAAGAGGAGATAAAAATGAAGCACGAAACGAATTCGGATGTCGAGGAAATGGATTACGATGACGATAACGACGACGATTACATTCccgaaaacgaagaagaagtcgaagaaaaggaggaaaaaccaaaagtttttcagaaaaaaaggatTGCCGTGTATCAAGAACCCGATTCTGAGGACAAATCCAAGTTCGTATGCGACTTATGCGGAAAAGGATACGCTGTGAGACAAGATTTGACGTATCACATGAACGTTCATGCGggTGTCAATCCGTTCGTTTGTAACATCGATAATTGCACAAAATCGTATCCTCATCCACGAACATTGAAAGTACATCAACGCGAAATGCACAATGTATGGAATGGAAAGCCCGTGGAGAAGCCAACTGTCGTAAATAAAGATCCtgagtacgaaaaaaaattagatgagCTTCGAGATGAGAATTTCGACATCGACAAGTACTATTTAGAGGAGAGAAAAGGACAAAAACGCCCGTATCAATGTGCAATTTGCTCCAAATATTACAACAAAACGGAATTTCAGTATCACCGTTTCCTGCATTTGCGTTTAAAGCCCTTTAAATGTGCAGATTGCGATAAAGCTTACGCAAGTCCCTTCGAATTATCCAAACATTTCCGCAAAACGCACGAAACGAACAGCGAAAGTGACGGCGACGATcgagaaaatgtcaaaaaggaACATTCCGAGGACGAAAACGAGCCAATTATGGAATTAACGCCGGATAATTCGATGCGCGACACGAACGACGACACAAAATTGTATCGAGATCTCGAAAAGTACTTTGTTGATGAGCGACGCGGATGTCGTCGTGCCTACGAATGTCCCGATTGCAAGAAACTCTATAGTCGGGGCGAGCTAAAGTATCATTTGAACACTCATAAGAACATAAAACCATATGCTTGTGCGGTTGAAGACTGTGACAAATCATTTTCAAGCCCGCGCGATATGAGAGTTCATGCTTTgaagtttcataaaattaaagttaagccAACAAAGGATTATAGCATGAAAAATAGCAGAAATTCTAttaagagagagaaaagtgaGAGAACTCTTGGAgttgaatataataaaattaacgtgATTTGCACGGTTTGCGGTAAAAGTGTGAGGAAAAAACACTTTAGGGAACATTATCAAATACACATCAAGACGGATTTCTCTTGTCCGTACGAGAATCAAGGCTGCAAAGAAGTTTTTAAGAACAAAATGAAACTTACGTCGCATATCCAAGCGAAACATGATCCTGAATATACGCCGCCAGCGGAGAATTCTTGTATGTGTGAGCATTGCGGGAAGAGATTAACAAAGGGTCAGCTTAAATATCACATGAATCTCCATTTGGGTCTCACGCCATACGCTTGTGAATATCCCGAATGCAACGAAGCATACCGCAGTCCAAATCTCCTTCGTCAACACATTGCCGGTTATCATCTCAAGCAAATGCGCTTCAAATGCCATTACTGTTCGAAGCGTTTTAACACAAAAGAAGAGCAAGAAGAacacaaaaaggaaaattgcGGCGTAAAAACCGCAACTTGTCACATGTGTGGCAAAACAATGAAcaaatttagcttaaaaaatcatcttttggTACACACGGGCGAGAAAAATTGGGTTTGTGAGTTTGAGGGATGCGGAAAAGCGTTTATACGACGCGACAAGCtgcaacaacacaaaaaagtgcATTCGACAGACGATCATTACATGTGTCAGTATTGCAATACAGGTTTCCGATATAAATCGTGGCTTGATACGCATATCGAGAAGAAACATTCGGACATTGTGACGTTAGGGGAACGCATTTCGTACCAAATTAtcgataattaa
- Protein Sequence
- METRKQSHQCVCCLTKNDLTVLDAEKRKTLSSFLRVSAKKFSESRICINCNSTLSCVDRFRQNALWAQTILDRCKLKNSFLSSVTDESVSSSFDSILNWMNDVTVILKYYMTDLKEEIKIAEYEEDEEIEHEEELFVGSVDEGNIKKEVMEVEALEEVEEEIKMKHETNSDVEEMDYDDDNDDDYIPENEEEVEEKEEKPKVFQKKRIAVYQEPDSEDKSKFVCDLCGKGYAVRQDLTYHMNVHAGVNPFVCNIDNCTKSYPHPRTLKVHQREMHNVWNGKPVEKPTVVNKDPEYEKKLDELRDENFDIDKYYLEERKGQKRPYQCAICSKYYNKTEFQYHRFLHLRLKPFKCADCDKAYASPFELSKHFRKTHETNSESDGDDRENVKKEHSEDENEPIMELTPDNSMRDTNDDTKLYRDLEKYFVDERRGCRRAYECPDCKKLYSRGELKYHLNTHKNIKPYACAVEDCDKSFSSPRDMRVHALKFHKIKVKPTKDYSMKNSRNSIKREKSERTLGVEYNKINVICTVCGKSVRKKHFREHYQIHIKTDFSCPYENQGCKEVFKNKMKLTSHIQAKHDPEYTPPAENSCMCEHCGKRLTKGQLKYHMNLHLGLTPYACEYPECNEAYRSPNLLRQHIAGYHLKQMRFKCHYCSKRFNTKEEQEEHKKENCGVKTATCHMCGKTMNKFSLKNHLLVHTGEKNWVCEFEGCGKAFIRRDKLQQHKKVHSTDDHYMCQYCNTGFRYKSWLDTHIEKKHSDIVTLGERISYQIIDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -