Cbre010731.1
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- -
- Assembly
- GCA_036172545.2
- Location
- CM070087.1:6869177-6875402[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5.3 2e+02 2.5 0.2 2 23 6 27 5 27 0.92 2 14 0.0012 0.047 14.0 2.3 1 23 883 906 883 906 0.96 3 14 0.024 0.9 9.9 3.9 1 23 1012 1034 1012 1034 0.97 4 14 8.9e-06 0.00034 20.7 0.2 2 23 1037 1058 1037 1058 0.97 5 14 6.4e-05 0.0024 18.0 0.9 1 23 1064 1086 1064 1086 0.99 6 14 0.00012 0.0045 17.2 4.6 2 23 1093 1114 1092 1115 0.95 7 14 0.02 0.77 10.1 0.1 5 23 1128 1146 1126 1146 0.97 8 14 0.0007 0.027 14.7 2.5 2 23 1152 1174 1151 1174 0.95 9 14 0.0015 0.057 13.7 0.4 2 23 1187 1207 1186 1207 0.97 10 14 5.2e-05 0.002 18.3 2.9 1 20 1214 1233 1214 1236 0.92 11 14 0.00062 0.024 14.9 0.1 1 23 1244 1266 1244 1266 0.98 12 14 6e-05 0.0023 18.1 5.8 1 23 1272 1294 1272 1294 0.98 13 14 7.4e-05 0.0028 17.8 4.0 1 23 1300 1322 1300 1322 0.99 14 14 0.0023 0.088 13.1 4.5 1 23 1328 1350 1328 1351 0.96
Sequence Information
- Coding Sequence
- ATGGAATCCGTGGTCCAGTGTCCCGTTTGCACCCTTTTTCTGCATCCTGGCATGAGTTTGGAGGATCACTTGAACACCCATCCCAAGGATCAAGTCATTTTAGCACTGTCACAACTCACGTTACAACGCGCCAACATCCTCAGCGGCACGCAATTCAGTCCTCCAGCATCAAAATCGCCGTCGCCAACGACTCCAAGTGCTCCCGCAACGACGTCAAACACGCAATCCGTAATTCCCGCGCCATCCACGGCTCCAGCAACCACAAACAGTATTCCCGCAAGCGTCTCCGAAGTGAATGGCAATCAATTTCCCTGCAATTTCAGCAGAAAATCTGAACCCACGGCACTTTTAATACAAGTTCAGACCCCAAATGCGGCAAGTTCAAGTGCTCGAACGTCTCCGCAACTGTTCCAAACGCAAGACACGGCGCCGAAAAACCTCATGATCATCAATCAGTATCAACCGAAAGTTGCGACATCGCCTCCGAAGCGTCCCCAAATGACTCTTGCGTACTCAGAACCGCCATCTCTCGTCCCGCGATACACTTCCGAACGATATTCGGGCCCGCCGCCTCCTTATAGCACGGCAATTTCATCAACTTCCTTCAATAACTTCACCAGCATCGCTCGGGATCACTATTTAAGCAACGATAATTCGAGTTCGAGTGAACAATCCCGCTTCGAAGTGAAAGCCCATTACATGGAAAAGGAAGATGGCAATTTTGTCGTCACTGAACCGCcgcaaaaaattgtcgaataCTCGGAAGATGAGAATGGGGTCTTGACATTGTcggaaaaagtgataaaatctCCGCCGCGCCTCATTTCGTGCAGCGGATCTGACGACGAGTCGATCCAAAATGTGTCGGAACCCGTTCCAGCGGATACTTTATACGTCTCCGAACCGATTTTAGTCGAAAAAGTCGACAAAATGACGGTTGAAGCCTTGGATGAGGTAACGCACACGCAGCCTGTGCCCGGAAATAagcgaaaaacaacaaatggaCTGAAAGTTTTGAGTAACGTGAAAGTTACGCAGGACATGATCTCACCTGGGTTGCAGGAAATCATCAGAAACAACAATCGCAAAGGCAGgagaatcaataaaataacgaaTAAAAGACCAACGGAGCTCATGTCGCCTTCGCCTCCATTAAGAAGTCCCCAACCATCGACGAGTAACGTTCATTGCGACGACGAAGTGATGGATTTGACCCAAAATAGCGCTTCACACGTGGCAATTGATCTGCATGCGCCCTCTACCAGTCGATCCGCGAACTTACGATACGAGATCGAGACGCATGTCGAATACCAAATGTCCGATATGCCGTCGGAAGATGCGCTTGAACAAGCGGAAGTCATGAACGACGAGGATTTTCAACACGACGAAGATATTGAGGAAGTTCATGATTATATGTCGTCACCCCCGCCCCTTTCATCGACCCCCACAAGCGTTATACGGACAATTAACGACGTCAAATCGCCCGAACCTGAATTAATTAAGTCTGAAAAACCCTCGGAAACCTCACTGCCGCTCATTATGTCTCCGAAACCATCGACGTCGTCTCAGGATTCGCACTTGAATGCCAATAACCCTCCCCCAAAGGCGGgggcaaacacaaaaattggaCAACCGATCTTGCAAAAACCGAAAAAGCTGACGTTGAAGCTGAAAAAGACACTTCCATGCCAAAATGAGACTCAAACGCAGATCAAAATTGAGCCAGAATCGACTGAAACGTCGCAGGAACCGAAAATATTCAATGCGGTTAAGATTAAAAccgaaaaaatcgataattcgTTCGAGATGTCGAAGGAAAATGAAGACTTTGAAGTTCGGGAAGAGGAAAAATCCGTGAAAAACGTCGATATTGCTGAAGCTGGACCGAGTCACGCATCAGAAAATACCATTTCCAGTAGTTTTACGATAACCTACATGGAAGAAGAAGGCGAAATTGCGGCGCCCCCGGAAGATTTAGATGAAATTGATGAAGAAGATGAAGCGCCAAACGCttcaaatgacgaaaaaatgcaatattatCCCGTAATGTACAttcaacagcagcagcagcagcaacaaaatcAACAATCGCAAGAAAATCCCGCGCCCCTTTCTTGGGTTCAGAGATTCAGTCCGCAATACGTTCCCTTTGATGAACGCAGTTCCTATATGGAAATGGATGGAAGTTatagcaaaaattcaaattctgtGAGTTTAACGAGTGAAGGTGACACGCGAAACGGGCAAAGTAGTAATTCCTTCGATGAAAGGGCTCCGTCGGCAGATAGTTGTTTGAATATTAGGACTGATGAGAAAATGCCCGCAAAAGGGGAAATTAGTGAGCAGGAGAGTAATGGAGAGATCGATTCGTGGAATCAAGTGTATCAAGATCCGATTCAGCAATATCCAAGTTCGTATGATGTCTCGACGGCGCAAGAATGTTGGAATTTGAGCAATAATAAGCCGGAGTttttgcagcagcagcaacagcaatcGCAGCAATTTGCTACTTTcCCACCATTGCAACAAATCGATAGCAGTCGAAATGTCTTACCGTTCATACCAAAGGAGGAAAAGCCCGACTTAGACATCGACAAAGTTGAAGCGAGTCCCGCAACGACAGTCAAGCCTAAACGTCCCCGCACCTACCGCTGCCCGGATTGCGTCAAATGCTTCACATCGCTCAAACAACGACGTCTCCATCTCATTTCCGAGCATCAGTTCAACGAAGGCTCCTCACATTTCACCTCGAAACCCTCATCGTCGAATGCCGTGCCCGATATCAACTTGGAAGCGGGTTGCAGTAGCAGCACAAGTCACCAAATCGGCGGCTTATCAATTCTGAACAGCGACAATTTAACAGGCCTCACCCAGATCGTCAGCAATTTCGAGATTGTGAAGCAAGAACATGCGGCATCGACGGGTTTCGGACTCGAAATGGAAGATATCAAGCCGTTTGTCGTGACGCCGTCGCAAATTAACGAAGAGATTTTCCATGCGGTGCGTgtcgagaacaaaaaaatgctgaTAACGTACAAATGTAGCACGTGTCGCGAGGATTTCAAGAACCTCAAGACGTTCAACAAGCATTTTACGGTGCATCCGGCGGAATGTGCGATTTGCGGCAAGAGTTTTAGTCGATGGGCGACATTCGCGTTGCATCTGAAACGGCATTACAACATCCGGGACTTCCAGTGTCGCATTTGTCAGAAGAGTTTCATCTTGCGACAAAAGCTCGTCGAGCATATGCGAGTTCATACGGGCGTTGCGCCGATCCAATGCAACATTTGTCACGCCCGTTTCCGTCGTTATTCGAATTTGGCGCAACATCGGAATCGACATCACTTGAATAAACGCCCGTACCGCAAGGATTACGTTTGCGAATGCGGCGAAACGTTCGTGTCTCAGGCGAAACTCGACTGGCATCGCGAAACGCACGAAGATAAACCCAAAGTTTGTCCCTTTTGTCGCGAACGTTTCGTGCACAAGAACAGTTTGACGCGTCACGTGCGTCTTTCGCATCCCGACAAATACATTCTgctcaagaacaaaactgtcaCGTGTCCCTATTGCGACAAAAAGTACCTCCAGACGAGCTTAAAGGCGCATTTGGAGACACATTCGAAGGAGAAGAATCAGTACTCGTGCACGATTTGCAACAAGGAGTTTAGCACAAAATGGAATCTGAAGCAGCATCATTGGACGCATGCCAATCGCTCGAGCAAGCCGTTCCAGTGCAACGTTTGTCCGAATGCCTTTGTGCGCGAAAACGACTACATCACACACATGAACGCGCACAAATCCATCAGACCGTACACCTGTAACCATTGTGGATGTCAATTTGTGCGGAAGTCGAACTGGATGCGACACACGAGGGAACACGAACAAGACAAGAACTACACTTGTGAACTGTGCAATAAGAAATTCCACCGAGCTTACTATTTGACGGAACATAGGAGGGTGCATACAGGTGAACGCCCATTTTCGTGCAATATCTGCGGCAAGACTTCAGCAACAAAAACGAATCACAACAAACACATCAAGATTCATCACGCACGCGATCCACTCACAGCTGAAGGTTAA
- Protein Sequence
- MESVVQCPVCTLFLHPGMSLEDHLNTHPKDQVILALSQLTLQRANILSGTQFSPPASKSPSPTTPSAPATTSNTQSVIPAPSTAPATTNSIPASVSEVNGNQFPCNFSRKSEPTALLIQVQTPNAASSSARTSPQLFQTQDTAPKNLMIINQYQPKVATSPPKRPQMTLAYSEPPSLVPRYTSERYSGPPPPYSTAISSTSFNNFTSIARDHYLSNDNSSSSEQSRFEVKAHYMEKEDGNFVVTEPPQKIVEYSEDENGVLTLSEKVIKSPPRLISCSGSDDESIQNVSEPVPADTLYVSEPILVEKVDKMTVEALDEVTHTQPVPGNKRKTTNGLKVLSNVKVTQDMISPGLQEIIRNNNRKGRRINKITNKRPTELMSPSPPLRSPQPSTSNVHCDDEVMDLTQNSASHVAIDLHAPSTSRSANLRYEIETHVEYQMSDMPSEDALEQAEVMNDEDFQHDEDIEEVHDYMSSPPPLSSTPTSVIRTINDVKSPEPELIKSEKPSETSLPLIMSPKPSTSSQDSHLNANNPPPKAGANTKIGQPILQKPKKLTLKLKKTLPCQNETQTQIKIEPESTETSQEPKIFNAVKIKTEKIDNSFEMSKENEDFEVREEEKSVKNVDIAEAGPSHASENTISSSFTITYMEEEGEIAAPPEDLDEIDEEDEAPNASNDEKMQYYPVMYIQQQQQQQQNQQSQENPAPLSWVQRFSPQYVPFDERSSYMEMDGSYSKNSNSVSLTSEGDTRNGQSSNSFDERAPSADSCLNIRTDEKMPAKGEISEQESNGEIDSWNQVYQDPIQQYPSSYDVSTAQECWNLSNNKPEFLQQQQQQSQQFATFPPLQQIDSSRNVLPFIPKEEKPDLDIDKVEASPATTVKPKRPRTYRCPDCVKCFTSLKQRRLHLISEHQFNEGSSHFTSKPSSSNAVPDINLEAGCSSSTSHQIGGLSILNSDNLTGLTQIVSNFEIVKQEHAASTGFGLEMEDIKPFVVTPSQINEEIFHAVRVENKKMLITYKCSTCREDFKNLKTFNKHFTVHPAECAICGKSFSRWATFALHLKRHYNIRDFQCRICQKSFILRQKLVEHMRVHTGVAPIQCNICHARFRRYSNLAQHRNRHHLNKRPYRKDYVCECGETFVSQAKLDWHRETHEDKPKVCPFCRERFVHKNSLTRHVRLSHPDKYILLKNKTVTCPYCDKKYLQTSLKAHLETHSKEKNQYSCTICNKEFSTKWNLKQHHWTHANRSSKPFQCNVCPNAFVRENDYITHMNAHKSIRPYTCNHCGCQFVRKSNWMRHTREHEQDKNYTCELCNKKFHRAYYLTEHRRVHTGERPFSCNICGKTSATKTNHNKHIKIHHARDPLTAEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -