Basic Information

Insect: Culicoides brevitarsis
Gene Symbol: -
Assembly: GCA_036172545.2
Location: CM070086.1:31318114-31319820[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 3.4 1.3e+02 3.1 2.0 2 23 13 34 12 34 0.86

2 19 0.61 23 5.5 2.2 1 23 40 63 40 63 0.93

3 19 5.8e-06 0.00022 21.3 1.1 1 23 69 92 69 92 0.98

4 19 2.1e-06 8.2e-05 22.7 4.3 2 23 99 120 99 120 0.98

5 19 0.2 7.7 7.0 1.4 1 23 129 152 129 152 0.93

6 19 1.1 42 4.7 1.7 2 23 160 181 159 181 0.86

7 19 0.004 0.15 12.3 3.5 2 23 188 210 187 210 0.94

8 19 0.00096 0.037 14.3 1.9 1 23 216 239 216 239 0.98

9 19 0.00017 0.0065 16.7 0.8 1 23 249 272 249 272 0.95

10 19 8.1 3.1e+02 1.9 1.5 2 23 280 301 279 301 0.73

11 19 0.61 23 5.5 2.2 1 23 307 330 307 330 0.93

12 19 5.8e-06 0.00022 21.3 1.1 1 23 336 359 336 359 0.98

13 19 2.6e-06 0.0001 22.4 3.0 2 23 366 387 366 387 0.98

14 19 0.27 10 6.6 0.9 1 23 396 419 396 419 0.92

15 19 1.4 54 4.3 1.6 2 23 427 448 426 448 0.84

16 19 0.00018 0.0069 16.6 0.3 2 23 455 477 454 477 0.93

17 19 1.2e-08 4.5e-07 29.8 1.7 1 23 483 506 483 506 0.98

18 19 0.00018 0.0067 16.6 1.4 2 23 513 534 513 534 0.95

19 19 0.096 3.7 8.0 2.2 1 23 539 564 539 564 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	3.4	1.3e+02	3.1	2.0	2	23	13	34	12	34	0.86
2	19	0.61	23	5.5	2.2	1	23	40	63	40	63	0.93
3	19	5.8e-06	0.00022	21.3	1.1	1	23	69	92	69	92	0.98
4	19	2.1e-06	8.2e-05	22.7	4.3	2	23	99	120	99	120	0.98
5	19	0.2	7.7	7.0	1.4	1	23	129	152	129	152	0.93
6	19	1.1	42	4.7	1.7	2	23	160	181	159	181	0.86
7	19	0.004	0.15	12.3	3.5	2	23	188	210	187	210	0.94
8	19	0.00096	0.037	14.3	1.9	1	23	216	239	216	239	0.98
9	19	0.00017	0.0065	16.7	0.8	1	23	249	272	249	272	0.95
10	19	8.1	3.1e+02	1.9	1.5	2	23	280	301	279	301	0.73
11	19	0.61	23	5.5	2.2	1	23	307	330	307	330	0.93
12	19	5.8e-06	0.00022	21.3	1.1	1	23	336	359	336	359	0.98
13	19	2.6e-06	0.0001	22.4	3.0	2	23	366	387	366	387	0.98
14	19	0.27	10	6.6	0.9	1	23	396	419	396	419	0.92
15	19	1.4	54	4.3	1.6	2	23	427	448	426	448	0.84
16	19	0.00018	0.0069	16.6	0.3	2	23	455	477	454	477	0.93
17	19	1.2e-08	4.5e-07	29.8	1.7	1	23	483	506	483	506	0.98
18	19	0.00018	0.0067	16.6	1.4	2	23	513	534	513	534	0.95
19	19	0.096	3.7	8.0	2.2	1	23	539	564	539	564	0.95

Sequence Information

Coding Sequence: ATGAGATCAATTCACCTGAAGAGTGTTCCTCGAACAAAATGTgacttttgtgagaaaaaggtAATcactaaaaacttaaaaagccACATTCTGCATGTTCACGAAAAGGACTTTAAGCACAAATGTATCGTATGCAAAAAAGGTTTCTATGCTCCCACATGTTTACGAGATCATTTGGCAATCAAACACTTAGAAGAAAATCTATACGAATGCTCAGTTTGTAATAAGAATTATAGTAATAAGGGACGCTTGACCAGACATGTAAAAACGGTTCATGAAAGAATTGTTGTCGCTAAATGTGAGAAATGTGGAAGAACCTTTTCAACCATGGATCACTACAAAAGACATATGAAAATTCATGAGACGTTAAATGAACATCTAAAGTTTACCTGTGATCTGTGTGGAAAGAAGACTTTGTGGAAAGAAACTTTGAAAACTCACATGATATCAGTTCATCTGAAGAGTGTCCCTCGcacaaaatgtgaattttgtgataaaatggtAATCACTCAACAATTAAAGAACCACATTCAGCATGTTCACGAGAAGAACTTTAAACTAAAATGTAATATCTGCAAAAAAGGTTTCCATAGTGCCAGATGTTTACGAGATCATTTGGCAATCAAACATTTAAAGGAAGAGCTGTACAAATGTtcaatttgtaagaaaaaccATTCTAGCAAAGGAGGTTTAAATTTACACATTAAAACGATTCATGAAGGAGTTAAATCGATCAAACCAACGTTTACCTGTGATCTGTGTGGAATGAAGACTTTTAGGAAAGAAACTTTGAAAAGTCACATGATATCAATTCATCTGAAGAATGTCCCTCGCACAAAATGTgacttttgtgagaaaatggtaatcactaaaaaattaaagagccACATTCTGCATGTTCACGAAAAGGACTTTAAGCACAAATGTATCGTATGCAAAAAAGGTTTCTATGCTCCCACATGTTTACGAGATCATTTGGCAATCAAACACTTAGAAGAAAATCTATACGAATGCTCAGTTTGTAATAAGAATTATAGTAATAAGGGACGCTTGACCAGACATGTAAAAACGGTTCATGAAAGAATTGTTGGTCCTAAATGTGAGAAATGTGGAAGAACCTTTTCAACCATGGATCACTACAAAAGGCATATGATAATTCATAATACGTTAAATGAACATCTAAAGTTTACCTGTGATTTGTGTGGAAAGAATACTTTGTGGAAAGAGACTTTGAAAAGCCACATGATATCAATTCATCTGAAGAGTGTCCCTCGtacaaaatgtgaattttgtgataaaatggtAATCACTCAACAATTAAAGAGCCACATTCAGCATGTTCACGAGAAGAACTTCAAACTAAAATGTAATATCTGCAATAAAGGTTTCATAAGTACCATAAATTTGCGAGATCATTTGGCTTTGAAACACTTAAAGGAAGAACTTTACAAATGTTCGGTTTGCAATAAAACTTTTAGCACTAAAGGAAGTTTAACCCGGCACATAAAAACGGGCCATGAAGGAGTTAAATCAGctaaatgcgaaaaatgtgGAAGAACTTTCACACAGTTGAAAAGCTATAGACTTCATTTAGTGTTGCATGAAAAGAAGCCGTTTACTTGTAATCATGACTCTTGCTTCCAATTGTTCGAAACTAAAACAGCTTTGAAGAAACATCTCGCAAAACCTCACAAAAAAAGAtcataa
Protein Sequence: MRSIHLKSVPRTKCDFCEKKVITKNLKSHILHVHEKDFKHKCIVCKKGFYAPTCLRDHLAIKHLEENLYECSVCNKNYSNKGRLTRHVKTVHERIVVAKCEKCGRTFSTMDHYKRHMKIHETLNEHLKFTCDLCGKKTLWKETLKTHMISVHLKSVPRTKCEFCDKMVITQQLKNHIQHVHEKNFKLKCNICKKGFHSARCLRDHLAIKHLKEELYKCSICKKNHSSKGGLNLHIKTIHEGVKSIKPTFTCDLCGMKTFRKETLKSHMISIHLKNVPRTKCDFCEKMVITKKLKSHILHVHEKDFKHKCIVCKKGFYAPTCLRDHLAIKHLEENLYECSVCNKNYSNKGRLTRHVKTVHERIVGPKCEKCGRTFSTMDHYKRHMIIHNTLNEHLKFTCDLCGKNTLWKETLKSHMISIHLKSVPRTKCEFCDKMVITQQLKSHIQHVHEKNFKLKCNICNKGFISTINLRDHLALKHLKEELYKCSVCNKTFSTKGSLTRHIKTGHEGVKSAKCEKCGRTFTQLKSYRLHLVLHEKKPFTCNHDSCFQLFETKTALKKHLAKPHKKRS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -