Cbre000714.1
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- -
- Assembly
- GCA_036172545.2
- Location
- CM070085.1:7204224-7205974[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8.4 3.2e+02 1.9 1.1 2 23 174 196 173 196 0.89 2 12 0.0059 0.23 11.8 5.9 2 23 201 222 200 222 0.96 3 12 0.0075 0.29 11.5 3.8 1 23 226 248 226 248 0.98 4 12 8e-05 0.003 17.7 1.7 1 23 254 277 254 277 0.98 5 12 0.0013 0.051 13.9 2.4 1 23 286 309 286 309 0.96 6 12 1.4e-06 5.2e-05 23.3 1.5 1 23 315 337 315 337 0.98 7 12 1.5e-06 5.6e-05 23.2 1.9 1 23 343 365 343 365 0.98 8 12 1.2e-06 4.7e-05 23.4 0.9 1 23 371 393 371 393 0.98 9 12 2.8e-06 0.00011 22.3 1.2 1 23 399 421 399 421 0.98 10 12 0.00052 0.02 15.1 1.1 1 23 427 448 427 448 0.94 11 12 1.8e-05 0.0007 19.7 0.2 1 23 454 479 454 479 0.97 12 12 6.7e-05 0.0026 17.9 0.7 1 23 485 509 485 509 0.96
Sequence Information
- Coding Sequence
- atggaGACAAATAACGATGGAGACACTCAATTGCAAGAACTACTTTTGGAATATCATGGAAATCAAAAGTCTTCCGACTCTAATGAAGAATTAGATGAAGATATCATCAACACTTTATGTCGTACTTGCTTAAAAAAGTCTCCGGATGTCGAATTACAATCGATGTTTGAGCAATTTACGTTTATTCCGGCGTTTTTAATGTCTTTTGCTGCTGTAGAAAAGCCTCTGCAAGGCGATGGATTGTCAGAATTCATTTGTACGAACTGCATCGATCAGGTCAACGAAACTTACAACTTTAGAAAACAAATTGAAGCAGCTGACATGGAGTTGCGACAAGTAATTAAGGAATGTAACAGCGACGAGGATGGCTTAATTGAAGAAcagctcGTTACGGAAGATTATACAAATTTGGATGATCTTGATATGGAAGACATTCTTTCTTGTCGAATTCCGTTTCCATTAACATCGGATGAAAACATAATTGAGTCAGAAACTAAAGAGATAAAGATTTCTTCGCATGTTTGTATCAACTGTCAAGCAGCTTTCGAGACTTCAGAAATTTTGGAAACTCATCTTAATCAATGTCATCCAACAAATCTCAAATGTAAACATTGCAAGGAGACATTTACGCATGAATTCGACTATAATTTACATCAATCCTTGCATTCAAATTCTTATGTTTGTACTTTTTGCAAAAAGGACTGTAAAGATAGGAAAAGTCAACGACGCCATATTGCAATTCATTTTAAAGACAAACCTTTTAAATGTTCGGAATGTTCGCAACAATTCGCTGAACAAGCATCTCTTACACGACATCGGAAAAAGCAACATTTAGGAGTTCAACGcatcaaaaagtttcattgtGATTCATGTCAACAACAATTTTACGACAAATACACGTTAGAAGTTCACATCAGAGCGAAGCACACGCTTGTTAAACCATTTTCTTGTTCACAGTGTGATAAGAGCTTCGTAGATAAACGTCTTTTGAAAtcccatttaaaaattcattcggaTACGAAAAATTATGTATGCGATTTGTGTAGCAAAGCTTTCAAACATCAATCAACTTTGGTTCTTCACATGCGAAATCACAGCTCCGATCGCCCATTCAAATGCGAAATTTGCAACATTTCCTTCAAACAAAGAAGTACATTAAACAGCCACGTATTAATGCACACCGGTGTCAAACCATATGTTTGTAAAATTTGCGAAAAGAGATTTACAGCATCGAGTTCGTTAAAAACTCATGAAAGATCGCATGTCGATCAAAAACCATTTCAATGTgaaatttgcaagaaaaaGTTCGCACGAAAGGATTTGAGAGCGCATTACGCTACACACACAAACCAAAAAGACTTTAGTTGTCCCGAAATGGGCTGTGATAAAGCTTATGCGACACAGAGTTTGCTTAATAcgcatcgaaaaataaaacattcagATGAAAATCCGTTCGTTTGCACGCAAGAAGGAtgcaaaaggaaattttcttcagaaattaatttacaaaaacatcTGAAAGCACATGCTCGAGCAGCGACAAATCAACAAAGCGACTTGGAATTGACAATTTCTCAACATAATTTGTTCAACAGTGAGAGTTCAATATCGTTTGCGTTGAGTGTGATGGATGAATTGGACCAATTTATGAAACAGAATCAAACTTCAACGACATTTGCGTCgaaataa
- Protein Sequence
- METNNDGDTQLQELLLEYHGNQKSSDSNEELDEDIINTLCRTCLKKSPDVELQSMFEQFTFIPAFLMSFAAVEKPLQGDGLSEFICTNCIDQVNETYNFRKQIEAADMELRQVIKECNSDEDGLIEEQLVTEDYTNLDDLDMEDILSCRIPFPLTSDENIIESETKEIKISSHVCINCQAAFETSEILETHLNQCHPTNLKCKHCKETFTHEFDYNLHQSLHSNSYVCTFCKKDCKDRKSQRRHIAIHFKDKPFKCSECSQQFAEQASLTRHRKKQHLGVQRIKKFHCDSCQQQFYDKYTLEVHIRAKHTLVKPFSCSQCDKSFVDKRLLKSHLKIHSDTKNYVCDLCSKAFKHQSTLVLHMRNHSSDRPFKCEICNISFKQRSTLNSHVLMHTGVKPYVCKICEKRFTASSSLKTHERSHVDQKPFQCEICKKKFARKDLRAHYATHTNQKDFSCPEMGCDKAYATQSLLNTHRKIKHSDENPFVCTQEGCKRKFSSEINLQKHLKAHARAATNQQSDLELTISQHNLFNSESSISFALSVMDELDQFMKQNQTSTTFASK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -