Cbre005773.1
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- -
- Assembly
- GCA_036172545.2
- Location
- CM070086.1:7959502-7963936[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 6.5 2.5e+02 2.3 2.4 1 19 166 184 166 186 0.86 2 18 0.13 5 7.6 0.5 3 23 204 225 204 225 0.96 3 18 0.00018 0.0067 16.6 3.8 1 23 231 253 231 253 0.98 4 18 0.013 0.48 10.8 4.8 1 23 259 282 259 282 0.97 5 18 0.00089 0.034 14.4 0.2 1 23 288 311 288 311 0.93 6 18 2.7e-07 1e-05 25.5 0.3 1 23 317 340 317 340 0.97 7 18 0.0032 0.12 12.7 4.3 1 23 379 401 379 401 0.98 8 18 5e-05 0.0019 18.3 3.7 1 23 407 429 407 429 0.99 9 18 0.081 3.1 8.2 0.2 2 21 516 535 515 536 0.93 10 18 4.5e-05 0.0017 18.5 0.8 2 23 552 574 552 574 0.96 11 18 8.8e-05 0.0034 17.6 0.8 1 23 580 603 580 603 0.97 12 18 0.0011 0.041 14.1 0.7 2 23 611 633 610 633 0.94 13 18 0.0067 0.26 11.6 0.1 2 23 640 662 639 662 0.93 14 18 0.0041 0.16 12.3 5.6 1 23 668 691 668 691 0.91 15 18 0.16 6.2 7.3 4.8 1 23 700 722 700 722 0.97 16 18 0.00072 0.028 14.7 0.9 1 23 730 752 730 752 0.97 17 18 0.00015 0.0057 16.8 3.9 1 23 758 780 758 780 0.98 18 18 0.0021 0.081 13.2 0.8 1 23 786 808 786 808 0.97
Sequence Information
- Coding Sequence
- atGCACGATAAACAGGAAATAAACTTACTTTTGGAGGTTGATCCTGTCACCggactcttaaaaaattacaaaatcatcaaaaatctgaaagatcaaataaagaaaagtaaaatttcgtTGGTTAAAAGTGACGAAGATGACTCCGAAAGAATCGCGAATTGCGATTGTTGCTCAAATCCTTACGAAATATTCCTGTATCAGCTTGAAAATGAGGCAAAAGAAGAGCTTGAACCAATTTCTGATGTAATTGAAGTCAAGGAGGAACAAATTTTCGTCGAACCAATTGTTCCATTGCCGGCGAAAACGAAgttaaagtcgaaaaaattgaagaaaaacccGACAAAAAATGAGTTGAAACCCGAAATTGACCcaaaaatccttgaaattgctcaaaattcAGCAAAACGCAAAGCAGGAAGACCCAAAAAAGGCGAAATTGTGATCCCGCAAAGGATTTTGGCGAAAAAAGTTTATGCAAAGAACGAAAATGGTTTCTACAAATGTGATAAATGTCAAACAGAATACGACAAATTGAGGCCTTTCAAGTTACATTTCCATTGTTGCAACGGAACAAACTTGGGACGTTATACAACAACTGAAACCCCTGGCTGCGGTTATTGCGGCAAACTTTATACAAATTGGCTCACTGCCCGttctcatgaaaaaatgaaacatgaaGCTGCCATAACTTACACTTGCGAAATTTGCGGTTATACCACAAAACACAAATATTCCTTCACAAATCACTTGTACATTCACGAGCCCAAGAAGCAGTTTATGTGCGATCTTTGCCAATATCGGTGCAGCAGTCGACACGGCATGAAGCAACATATGCAAATGATTCACCTGAAAATCGGAATTCACGTTTGTGAAGTTTGTGCGAAAATTTTCCCCAACTCGGAAGCTTTGAAATCGCATCTGGCTTATCAACATAGCGAAGAACGAAATTTTCCATGTCCAAATTGCGataaagcttttaaaactaaaataaacttaaattcgCATATTCAACGAATTCACATCCCGACAGagttgaaggaaaaatttcaatgtgaAAGATGCGATTTCTTCTCGTACTGCGGCAAAAGTTTCAAAGCTCATCAGGCGATTCATGTCGATACGGAAGATTGTCCTTATAAATGCCAAATTTGTCAACGAGGGTTCGTATCGAAACACAGATTTAAGGAACACGAGAAATCGCATTCAGATGAGAGGCCGTATCAATGCGATTATTGCGAAAAGGCTTTTAGACGAAAGGCGGATTGTAAAGTTCATATGAGATATCACACGGGCGAAAAACCGTATGAATTCAACCATGAACCTGAAGAAGTACAAACAACCAAAATTGAGCCTCTTGAAGAATTTCCTGTGGCagaaattaaaactgaagTCTTTGTAGAACCCGTACAATTATTTCCAACAGAAGATTTTGATGACAAATCTCATTTTGAAACAGAAGAAGTCGAAGAAAAACatgattttaatgataaacCTCAAAGAAGACCTCTTACAAAAGACATCAAAGTAGCTGAAGATGGTTCTGTCAAATGTCCTTACTGCCAATCAGAGTTCAGAAACAAATTAGCTCTTTCAGGtcatttaaagttttgtaaCCCAAACACTGTTGGTCGATACACAAAAGGTACTAAACCGACTTGTAGCTATTGCGGCAAAACTTTTTCACAATGGGGCACTGCGAGAACTCACGAAAAGAAAATCCACGAAGGACGAATTCAATTTACTTGCGAGGTTTGTGGCTATAACACAACTAACAAAGATTCCTTTGAAAACCATCAACTTCGAGATCACAAAGAGGAGCAAAAACATGTCGTTTGTGATATTTGCGGATATCGTTGCAGTAACAAAAACAGCATTCGAGCCCATATTAAATTCGTTCATCTCAAAGTTGACACTGTAACTTGCGATTTATGCGGAAAAGTCTTTCAAAGTGATTCGAGACTCGCGATTCATCGATCTTATGCCCATAAtgacgtcaaaaatttttcatgttcgaATTGCGATAAAATGTTCAAGACCAAGAGATGTTTGTTAAATCATAATTATAAGATGCATACACCGACGGAGCTGAAGAAGAAATATTCCTGTGATCATTGCGAATACACGTCCTTCAATAAGTTTAGTTACAAACAGCATTTGGGACGACACATGGATGACGAAGAAAAACAGTTTCAATGTTCAGTTTGTCAAAAAACGTTTGTCTCAATTTATCGGCTGAAAGATCACGAAGTTACACATTTAGAGGAAAGAAAGTTCAGATGTTTGTTTTGTGAGAAAGGTTTCAAACGAAAAGCTGACCTGAAAATTCACACGAGACATCATACGGGCGAGAAACCGTATGAATGTGAGATTTGCAAGCAAAGGTATGCGGATAGAGGATGTTATAGATCGCATATTATAGCGCATGAGAAGCAGCTGGGGATTGTGTTGGATAAAAGTGTTAAGCGATTTGTGGAGAAAAAagattga
- Protein Sequence
- MHDKQEINLLLEVDPVTGLLKNYKIIKNLKDQIKKSKISLVKSDEDDSERIANCDCCSNPYEIFLYQLENEAKEELEPISDVIEVKEEQIFVEPIVPLPAKTKLKSKKLKKNPTKNELKPEIDPKILEIAQNSAKRKAGRPKKGEIVIPQRILAKKVYAKNENGFYKCDKCQTEYDKLRPFKLHFHCCNGTNLGRYTTTETPGCGYCGKLYTNWLTARSHEKMKHEAAITYTCEICGYTTKHKYSFTNHLYIHEPKKQFMCDLCQYRCSSRHGMKQHMQMIHLKIGIHVCEVCAKIFPNSEALKSHLAYQHSEERNFPCPNCDKAFKTKINLNSHIQRIHIPTELKEKFQCERCDFFSYCGKSFKAHQAIHVDTEDCPYKCQICQRGFVSKHRFKEHEKSHSDERPYQCDYCEKAFRRKADCKVHMRYHTGEKPYEFNHEPEEVQTTKIEPLEEFPVAEIKTEVFVEPVQLFPTEDFDDKSHFETEEVEEKHDFNDKPQRRPLTKDIKVAEDGSVKCPYCQSEFRNKLALSGHLKFCNPNTVGRYTKGTKPTCSYCGKTFSQWGTARTHEKKIHEGRIQFTCEVCGYNTTNKDSFENHQLRDHKEEQKHVVCDICGYRCSNKNSIRAHIKFVHLKVDTVTCDLCGKVFQSDSRLAIHRSYAHNDVKNFSCSNCDKMFKTKRCLLNHNYKMHTPTELKKKYSCDHCEYTSFNKFSYKQHLGRHMDDEEKQFQCSVCQKTFVSIYRLKDHEVTHLEERKFRCLFCEKGFKRKADLKIHTRHHTGEKPYECEICKQRYADRGCYRSHIIAHEKQLGIVLDKSVKRFVEKKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -