Cbre005204.1
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- -
- Assembly
- GCA_036172545.2
- Location
- CM070086.1:2334691-2337908[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0053 0.2 12.0 2.0 2 23 170 192 169 192 0.94 2 17 0.0043 0.16 12.2 1.8 1 21 199 219 199 220 0.93 3 17 0.00025 0.0095 16.2 0.5 1 23 234 257 234 257 0.94 4 17 0.4 15 6.1 0.9 3 23 273 294 272 294 0.94 5 17 0.86 33 5.0 0.2 2 20 301 319 300 321 0.85 6 17 0.00055 0.021 15.1 3.9 1 23 366 389 366 389 0.97 7 17 0.00061 0.023 14.9 2.9 1 23 395 418 395 418 0.94 8 17 0.0017 0.063 13.6 4.3 1 23 424 446 424 446 0.99 9 17 7.3e-06 0.00028 21.0 0.3 1 23 452 474 452 474 0.96 10 17 4.5e-05 0.0017 18.5 4.4 1 23 480 502 480 502 0.98 11 17 7.4e-05 0.0028 17.8 0.3 1 23 507 530 507 530 0.97 12 17 0.56 21 5.6 1.6 2 23 546 567 546 567 0.91 13 17 0.00067 0.026 14.8 1.8 2 23 574 596 573 596 0.93 14 17 0.0012 0.047 14.0 5.4 1 23 602 624 602 624 0.98 15 17 9.1e-05 0.0035 17.5 2.8 1 23 630 652 630 652 0.97 16 17 2.3e-05 0.00088 19.4 1.9 2 23 659 681 658 681 0.96 17 17 1.4e-05 0.00054 20.1 0.9 1 23 687 710 687 710 0.98
Sequence Information
- Coding Sequence
- ATGGATCTCAATATCGTTTGTCGTGGCTGTCTTGCTGAAACCGATATCGTGGATTACTTCAAACTCGACGAAATCGGCTTAAACGACCAATCTTACAAGCAAATGTTGGAAGAAGTCTCCGGATATCAAATCAATGTCGAAACCGAACCGCATCGATTATGCGAAAACTGCGGAATTGTCCTCTTGGAGATGttcaaattcaaacaaacGCTCAACGAAACGCAAGAAATCCTCAATCAATTAACTTCAGAAGTCGCCGAAGACGAAGAAGGATGCTCAACAGTTGCTGTCGAGGAATTAGAACTCGTCGAAGATGTCCCGCTCGAAGATACGGAATACGGAATGGCTGTCGATACGGGAAAAACTATCGAAGAACTCATGGATGCCGAGGAAATTGAGGGTTTGGAGAACATTGGACTTGCTTACGTGAAGgaagaaaacaaaattgaCACAATCGGATACGATTCAGTCGATCCGCAATACACAATAattgaacaaaacaaaatttcctgCCCGTATTGCGAAACACTTTGTTCGACAAATCAATCGTTGTCGCGACACATGACGAACCAACATCCCGAAGTGAAACCCGATCATGCCTGCACGTATTGCGACAAGACGTATCACTTCAAGGAATGGTTGGAAAATCACGAGCGACAATGTCCCGGAGCTCGAGCTGCCAAAGAGGGAATGAGTGAGTTCCCCTGTAAATATTGCGAAAAAGTATTCGGCACGTATCGAAATATGAGAAGTCATGTCGCGATAAGTCACAGGGAACTCGAAAGGCAAACTGATGAGATGGCACGAGGCGTTGCATGTCCGTTTTGCGCGACGAAactgaaaaatcttcaaacgCTGAGACATCATTTGGCGAATGTGCATGCGGAACAGCGAACCATCAAGTGCGATTATTGTGATAACTACACTTTTACGACAGAATTGCTGCAAATTCATCTCACAAAGTGCAAAggatatttggaaaaattggaATTGCAGCAAATGGTGTGTCCCTATTGTCCCGTTGTGAAGCACGGAAAGAAGAAATTGAACGCGCATATTGTTGCTTGTCACACGAGGCACACGAATGAGGTTCCCTTCGAATGCGACATCTGTCATCGTTTATTGAAGACAAAAAGCTCTCTGCACAGTCACATGAAAGTCATGCACATGCAAAAGGATCCTCACAAATGCGATCATTGCGGAGAACAGTACAAAAGTCTTTCGGGACTGAAATATCACATCGCCCAATATCACATGCAAGTCGACACTTTTCAATGTCATCTTTGTGATTTCGAGACACGACAAGAATTCTTGCTGCGACGCCATCTGAAGAGACataacgcagaaaaaaatcacatttgtaCGGAATGCGGAAGAGCTTTTGGTTCTTTGGATTCGTTAAAAAGTCATATGCTTGTGCATACGGATGACAGACCATTTTCGTGCACTTATTGCAGTCGAACGTACAAAAGTAGGCAGAAATTGCGACAACATCAGCGAGTACATGAGGGATATCGATACGAATGTCCCGTTTGTCAAAATACATTCGTTACGAATCAAGCTTTGAGGCAACATGTGATGAAAAATCATCCGGAATTTGAATTGCCTCCGCCGGGAACAAAACGACAACTTGCCCAATgtgatatttgtaaaaaagtcATCAGAAAAGTTTCAATGTACAAACACATGCACGACTTACACATCCAGAAGCCCCTTTTGCATTGTCCTCATTGCGGAGAAACGTACAAAAGTGATTCCGGACTTCAATATCACATCTCGCAATATCATCAAGAACTGCAAAAATTCGAATGTCACTTTTGTGAATTCACAACGACGCAAAAAACGTTACTTAAACGACATTTGCAACGACACAATCCCGAGAAAACTTTCATTTGTCCGACTTGTGGGCGCGTTTGTTACTCTCTGCACTCCCTGAAGAAGCACCAAATAATTCACACGAACGAGAGACCATGGAAATGCTCGTTGTGCGATAAAGAGtacaaaagaaaggaaaaactGAAACAACATATGGCAAAATTCCATGAAAATCGAACAGATTACGAATGTCCTGTATGCCCCGAAGAATTCTTCAGAAATGAATCGTTGCGACAACACATTATGAAATGTCATCCGGAATACGAATTACCGCCGAAGGGCACGACGCTGCATAAAGCGAAGGACAAAAAGTTTGTCACAAAAGTATGGAGgaaagttgaaaaagttgCTGCTGTTGGAAATGTTAAATTAGAGAACTAA
- Protein Sequence
- MDLNIVCRGCLAETDIVDYFKLDEIGLNDQSYKQMLEEVSGYQINVETEPHRLCENCGIVLLEMFKFKQTLNETQEILNQLTSEVAEDEEGCSTVAVEELELVEDVPLEDTEYGMAVDTGKTIEELMDAEEIEGLENIGLAYVKEENKIDTIGYDSVDPQYTIIEQNKISCPYCETLCSTNQSLSRHMTNQHPEVKPDHACTYCDKTYHFKEWLENHERQCPGARAAKEGMSEFPCKYCEKVFGTYRNMRSHVAISHRELERQTDEMARGVACPFCATKLKNLQTLRHHLANVHAEQRTIKCDYCDNYTFTTELLQIHLTKCKGYLEKLELQQMVCPYCPVVKHGKKKLNAHIVACHTRHTNEVPFECDICHRLLKTKSSLHSHMKVMHMQKDPHKCDHCGEQYKSLSGLKYHIAQYHMQVDTFQCHLCDFETRQEFLLRRHLKRHNAEKNHICTECGRAFGSLDSLKSHMLVHTDDRPFSCTYCSRTYKSRQKLRQHQRVHEGYRYECPVCQNTFVTNQALRQHVMKNHPEFELPPPGTKRQLAQCDICKKVIRKVSMYKHMHDLHIQKPLLHCPHCGETYKSDSGLQYHISQYHQELQKFECHFCEFTTTQKTLLKRHLQRHNPEKTFICPTCGRVCYSLHSLKKHQIIHTNERPWKCSLCDKEYKRKEKLKQHMAKFHENRTDYECPVCPEEFFRNESLRQHIMKCHPEYELPPKGTTLHKAKDKKFVTKVWRKVEKVAAVGNVKLEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -