Cbre003774.1
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- -
- Assembly
- GCA_036172545.2
- Location
- CM070085.1:35250339-35253721[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.1 82 3.8 0.0 1 20 69 88 69 90 0.87 2 13 0.011 0.43 10.9 0.8 1 23 158 180 158 180 0.96 3 13 0.0034 0.13 12.6 3.5 1 23 200 223 200 223 0.97 4 13 0.00035 0.013 15.7 0.4 1 23 248 271 248 271 0.97 5 13 0.12 4.5 7.7 0.9 2 23 277 298 276 298 0.97 6 13 0.0029 0.11 12.8 0.0 2 23 305 327 304 327 0.95 7 13 3.8e-06 0.00014 21.9 4.3 1 23 333 355 333 355 0.98 8 13 7.4e-07 2.8e-05 24.1 2.8 1 23 361 383 361 383 0.98 9 13 2.6e-07 1e-05 25.5 0.2 1 23 389 411 389 411 0.98 10 13 1.6e-07 6.1e-06 26.2 2.4 1 23 417 439 417 439 0.99 11 13 1.2e-05 0.00045 20.3 5.8 1 23 445 467 445 467 0.98 12 13 0.00015 0.0056 16.9 2.0 1 23 473 495 473 495 0.96 13 13 6.1e-06 0.00023 21.2 2.5 1 23 501 523 501 523 0.99
Sequence Information
- Coding Sequence
- ATGGATTGTGGCGTTCAAACGCGATCCAAAGACAAAGTGTTGCCATTGCCGGACCTCATAAACGACACAGATCTGCTAGATTCGATTGGATTTTCGGACTTGCCGGTTTCACTGTCCTCCTTTTTCTGCCTAATTTGCGATGAGCAGCATCCAAGCGAAGACCAGATACGTTCGCACTACACGTCGCATCTCACAGACAAGACATTCGAGTGCCCGGATTGCGCAACGGTGATCGATGACTTGGATTATTTCTTGGAGCATGTCGATAATTGCGGTCCCTTGCCGGATTTGGGACAAACAACCGATAAATTGCACGAACTAAAGCCGTTGCACGAAGTCCCACAGAAGCAAATAAGTGACTCAGACTATGAATCACACCTTTCTACCGCATCAAATACGGATGCAACGACAAAAGAAGatgaaattgatacaaaactCACGTCAGACAACGAAAAAACCGAATTGGAAGAGTATCAATGCATCTTGTGTGTGACGACATTCAACAGTAAAGCCTCTTACAAGCAACACATCGAAAGCCATGGCACCGTATTTGATGATCTCAAGCTAAAATGCAAGCGGGGACGACGCGAACGTCCTTTCAAGTGCGAACTTTGCAGTAATTCCTTCAGCAGTTCGACATCGTTGCACTTGCACAAGCAAAAAATCCATCTCGGCTTGAATTTCGAGCAAGAAGGCAACGAAAATCGTCAACATCAACCGGCGCAAACGGCTGACGGGCCTTTTGTGTGTGCCCTGTGTCAAGCACGATACCCGCGAAAACGCGACTTGAAGAAACACATCCTCTCGACGCATTGTGTGGTGCCTGTGCAGTGCAAATATTGCTCGAAATTGTTCGATATCGAGAGTCGCATGCTGAAACATGTTCAACGACACGAAGGTCCTTCGCCAATTCCGTGCCCGGATTGCAATATCCCCTACGCGTCGGTAGTTGAGctggaaaaacacaaaaaatccacCCACACGCCaaataaatcgcacaaatgcaAGGAATGTGGCAAGTTTTTCACGAAATCCAACGATTTGTTGAAACATACACGCATCCATTTGGGAATTCGGCCATATTCGTGCTCGATTTGCAACAAATCCTTTACGCATCAGACGAGTTTGAGGAATCATCAGGCCGTGCATTCGGGAGAAAAGCCATTTATTTGTTCGTATTGCGGTGCGAGCTTTAGTTACGCGGGAAATTTGAAAGTTCACATCAGATCGCACACGAATGAACGCCCGTATACGTGTCACGTGTGTAATAAGACTTTTGCACGCACGGCAAATCTCAATGAGCATTTAAGGACACATACGCAAGAGAAACCGCACAAATGTGACTTTTGCGGGAAGCAATTTACGAGCAGTAGTACATTGAGTAAGCATAAGAAGACGCATTCAGGGGTCAAAAATCACGCGTGTGGCGTATGTGATCGACGTTTTACGGAAATGGCGCATCTTTCGAAGCATTTGAGGATTCATAcaggCGAAAAACCCTACAAATGCAACGTTTGTTTGAAAGACTTTCGACGATCAGATACGCTCAAAGTGCATTACAAAACCCATCTGAAGCCCAGAAAAGGCGATTACGGCGACGTTCCGCCTCCATATTCGACAATTCAAGTGCCAATGGAACAAATTGACGTTCCGTACCATCATCACACAgaacagcagcaacaaaatcatcaacaacaaGAATTACCGGTGTTGGAAACGGTTGATTACTCTCAAATGGAGTCTCAAATAATGGAAGATTTGCCATCGTACGAAATTCAAAGTACGCTACAAGACATTACGAGTTACGAGAATTCGATACAGTCAAATGTTAGTTTCGCCTTTTGGACAAATGATGCGTTCAATGAACAAATTACGACATCGGGCATGACAACGTCAATGATAAcggaattgtaa
- Protein Sequence
- MDCGVQTRSKDKVLPLPDLINDTDLLDSIGFSDLPVSLSSFFCLICDEQHPSEDQIRSHYTSHLTDKTFECPDCATVIDDLDYFLEHVDNCGPLPDLGQTTDKLHELKPLHEVPQKQISDSDYESHLSTASNTDATTKEDEIDTKLTSDNEKTELEEYQCILCVTTFNSKASYKQHIESHGTVFDDLKLKCKRGRRERPFKCELCSNSFSSSTSLHLHKQKIHLGLNFEQEGNENRQHQPAQTADGPFVCALCQARYPRKRDLKKHILSTHCVVPVQCKYCSKLFDIESRMLKHVQRHEGPSPIPCPDCNIPYASVVELEKHKKSTHTPNKSHKCKECGKFFTKSNDLLKHTRIHLGIRPYSCSICNKSFTHQTSLRNHQAVHSGEKPFICSYCGASFSYAGNLKVHIRSHTNERPYTCHVCNKTFARTANLNEHLRTHTQEKPHKCDFCGKQFTSSSTLSKHKKTHSGVKNHACGVCDRRFTEMAHLSKHLRIHTGEKPYKCNVCLKDFRRSDTLKVHYKTHLKPRKGDYGDVPPPYSTIQVPMEQIDVPYHHHTEQQQQNHQQQELPVLETVDYSQMESQIMEDLPSYEIQSTLQDITSYENSIQSNVSFAFWTNDAFNEQITTSGMTTSMITEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -