Cbre006657.1
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- -
- Assembly
- GCA_036172545.2
- Location
- CM070086.1:16022534-16024866[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00038 0.014 15.6 2.1 1 23 66 89 66 89 0.96 2 18 0.00025 0.0096 16.1 0.9 1 23 94 116 94 116 0.97 3 18 4.2e-07 1.6e-05 24.9 1.4 1 23 122 144 122 144 0.98 4 18 1.5e-05 0.00058 20.0 0.3 2 23 151 173 150 173 0.96 5 18 7.2e-05 0.0028 17.8 0.3 1 23 179 201 179 201 0.99 6 18 1.2e-05 0.00047 20.3 2.9 1 23 206 229 206 229 0.96 7 18 0.00016 0.0062 16.7 1.8 1 23 235 258 235 258 0.97 8 18 1.6e-05 0.00062 19.9 0.4 1 23 265 287 265 287 0.99 9 18 0.0028 0.11 12.9 1.3 2 23 296 317 295 317 0.97 10 18 0.4 15 6.1 0.1 2 20 322 340 321 342 0.91 11 18 4e-05 0.0015 18.7 2.8 1 23 539 561 539 561 0.98 12 18 9.6e-07 3.7e-05 23.7 0.3 1 23 567 589 567 589 0.96 13 18 3.2e-05 0.0012 18.9 1.9 1 23 595 617 595 617 0.99 14 18 0.0064 0.24 11.7 2.6 1 23 623 645 623 645 0.98 15 18 0.016 0.61 10.5 1.1 1 23 651 673 651 673 0.96 16 18 0.0009 0.034 14.4 1.5 1 23 679 701 679 701 0.98 17 18 0.012 0.47 10.8 0.2 3 21 709 727 708 730 0.89 18 18 0.038 1.4 9.3 3.7 1 23 732 755 732 755 0.94
Sequence Information
- Coding Sequence
- ATGGATTCCTTCTACAATCAAGCCTCGGAGGTTTATGGGCTTTTTGATTTGACGTCATCGAATGCATCACCGAATTTGGATCTCGAAACGCTCCCGGATGACTTGTTGGGACCCGTTTTGACGTCAATTCCCATCGAAATTGAGACGCAGGAACTGGAGGAAGAAGTTGTTTCCGATGAAAAAGATCGAAAATCCTTCAAATGTGGGACttgtgatgaaattttcacgtCTTTTAGTAAACTGAGGACTCATCGTTACAAAATTCATAAtgaaaaACAACACATGTGCGATTTCTGTTCAAAATCGTTCGGATTGTCTGCCGACCTGCGAATTCACTTGAGAATCCACACCGGAGTCAAACCATTCCCTTGTGAATTCTGTCCAAAGCGTTTTACGACGAGCAGCTCCCTACGAGATCACCTCAAAACGCATACGGGcgagaaaaattggaaatgcCAACAATGTCCGAAGGCATATGCCCGTTCGAGTGActtaaaagtgcattttaagACGGCTCACACGACAATTCGTCCCTACACGTGCCTCATTTGCAACAAAGGCTTCGTCATCCAGCGCGTTTTAAACGAACACATGCGAACGCACAACGGCACAAAGTTTCGCTGCGAAAATTGCCCAAAAACGTTCAACCTCAAGAGTCATTTGCGCATTCATCAGCAACAAGAACACTCGATGGAGCCACGTTACAAGTGCGAAACATGCAATTTGACTTTTACGAAGGCCATCGAACAAAAACGGCATATGCGACAAAGTCACATGTTCATTTCGAGACCTTTTAGATGCACGCAATGCCCGAATCGGTATgcaaataaggaaaatttggAGGTTCACATGGAAACACATCGAACgccagagaaaaaaaagtcgcaGTGTTTGATGTGCAACTTGTCGTTCGTGAAATCGACGGATTTTATGAATCATCTGAAGCAGCATGAGAAGGCGCTGACATGTACGGTTTGTCTAAAGTACTTTGAAAGTGTTGAAACACTGCAGGAACATTCCGAAACGTGTCCCCAGAGCTTCAAACGTCGCCTGGATGAggcgaaaatgatgaaaaagacgaaaaatgagaaaaagttacaggaaaaaattgattcgtCGCAAGAAAATGAAGTTTCGGAGGAATCAGTTGATGAATCGAGTATGAACGAGagtcaaaaattgaacgaTTTGCCAATTGAAATGTCAGAAAGCCAAGAAAATATCGATGAAGAAGAGTTTTTGAACGATCCAATCTTGGATGAGACAGAAAGTGTCTCGAAAACGATTGAAAATGACCccaaaatcatcgaaaaagatgaaaaattgaatgaaatcatGGTTgatgaaaccaaaaaaattattaaaatcccTGAAGAAGCTGAAAACGAcccaaaaattatcgaaaattatgaatttaatgaaaaaatggacCTGGATGAAACCAAAAAAACACTTGATACCTCAAAATCAATctcaaaaacgttaaaaaatgacgaaaaaccTTCCGAAACTCTCATGGAATGCAATATTTGCAGTTTCAAAATGCGATTTTCGGAAAAACGTTTCCTGCATCACTTTCGCAAACATTTTCCACCAACCGCAAAGTCCCATCCCTTCGAATGCCAAACGTGCCGCAAACTCTTCACCACTGCCAGCAACCTCAAAGTGCATCAACACGTTCACAACGATTCGCGGGACTATCTCTGCGCCGATTGCCCCAAAAAATACGCTCGTCTCAGCGATCTCAAGGTCCACATGCGAACGCACACCGACGAACGTCGTTTCAAATGTCACCTCTGCCCATCAGCCTTCCGCCAATCGAGCGTTTTGTCGCAACACATCCGCACGCACACCAACGAACGTCCCTTTGTGTGCCAAATTTGCTGCAAAGCCTTCAAAAGTAGCGGCACGCGGTCCGTTCACATGCGAAGTCATCGCAACGAGAGGAAATTCGTATGCGACAGTTgcgaaaaacgatttttaacgGGATCCGATTTAcgaaaacatcaatttttgcaTTCGGGTCAAGTGCCGTTTGAGTGTGGGACATGCGCTCGACGATTTCCGTTTGCGGGTCACTTGAAAAAGCACGAAAAATCTCACACATCGACGGAAAAGCCGGCATGCAAAAGCTGTGGCATCAAATTTGCGACAATGAACGACCTGCGAAGGCACAATTTGGATGCGCATACGTTCAGTTGTGGGCATTGCGATggaaaattttgcgaaaaagaGCTTTTTGAGCGACATTTGGaacaaaatcacgaaaaattctaa
- Protein Sequence
- MDSFYNQASEVYGLFDLTSSNASPNLDLETLPDDLLGPVLTSIPIEIETQELEEEVVSDEKDRKSFKCGTCDEIFTSFSKLRTHRYKIHNEKQHMCDFCSKSFGLSADLRIHLRIHTGVKPFPCEFCPKRFTTSSSLRDHLKTHTGEKNWKCQQCPKAYARSSDLKVHFKTAHTTIRPYTCLICNKGFVIQRVLNEHMRTHNGTKFRCENCPKTFNLKSHLRIHQQQEHSMEPRYKCETCNLTFTKAIEQKRHMRQSHMFISRPFRCTQCPNRYANKENLEVHMETHRTPEKKKSQCLMCNLSFVKSTDFMNHLKQHEKALTCTVCLKYFESVETLQEHSETCPQSFKRRLDEAKMMKKTKNEKKLQEKIDSSQENEVSEESVDESSMNESQKLNDLPIEMSESQENIDEEEFLNDPILDETESVSKTIENDPKIIEKDEKLNEIMVDETKKIIKIPEEAENDPKIIENYEFNEKMDLDETKKTLDTSKSISKTLKNDEKPSETLMECNICSFKMRFSEKRFLHHFRKHFPPTAKSHPFECQTCRKLFTTASNLKVHQHVHNDSRDYLCADCPKKYARLSDLKVHMRTHTDERRFKCHLCPSAFRQSSVLSQHIRTHTNERPFVCQICCKAFKSSGTRSVHMRSHRNERKFVCDSCEKRFLTGSDLRKHQFLHSGQVPFECGTCARRFPFAGHLKKHEKSHTSTEKPACKSCGIKFATMNDLRRHNLDAHTFSCGHCDGKFCEKELFERHLEQNHEKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -