Basic Information

Insect: Culicoides brevitarsis
Gene Symbol: -
Assembly: GCA_036172545.2
Location: CM070085.1:29939246-29943207[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 2.2e-05 0.00086 19.4 3.1 1 23 142 164 142 164 0.95

2 16 3.5e-08 1.3e-06 28.3 1.6 1 23 169 191 169 191 0.99

3 16 0.00047 0.018 15.3 1.0 1 19 211 229 211 231 0.96

4 16 4.2e-05 0.0016 18.6 4.7 1 23 239 261 239 261 0.98

5 16 0.0001 0.0039 17.4 1.4 1 23 266 288 266 288 0.97

6 16 0.12 4.6 7.7 0.4 1 20 322 341 322 343 0.95

7 16 0.00021 0.0081 16.4 3.2 1 23 351 373 351 373 0.97

8 16 0.00034 0.013 15.7 0.2 1 23 378 401 378 401 0.96

9 16 7.9e-05 0.003 17.7 1.1 1 23 424 446 424 446 0.99

10 16 1.9e-05 0.00072 19.7 3.2 1 23 451 474 451 474 0.97

11 16 0.001 0.039 14.2 2.4 1 23 495 519 495 519 0.97

12 16 0.0012 0.047 14.0 0.8 1 23 525 547 525 547 0.94

13 16 1.1e-05 0.00041 20.4 0.9 1 23 553 575 553 575 0.99

14 16 3.3e-06 0.00013 22.1 0.2 1 23 581 603 581 603 0.98

15 16 0.0014 0.052 13.8 1.5 1 23 609 631 609 631 0.96

16 16 1.8e-05 0.0007 19.7 0.6 1 23 637 659 637 659 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	2.2e-05	0.00086	19.4	3.1	1	23	142	164	142	164	0.95
2	16	3.5e-08	1.3e-06	28.3	1.6	1	23	169	191	169	191	0.99
3	16	0.00047	0.018	15.3	1.0	1	19	211	229	211	231	0.96
4	16	4.2e-05	0.0016	18.6	4.7	1	23	239	261	239	261	0.98
5	16	0.0001	0.0039	17.4	1.4	1	23	266	288	266	288	0.97
6	16	0.12	4.6	7.7	0.4	1	20	322	341	322	343	0.95
7	16	0.00021	0.0081	16.4	3.2	1	23	351	373	351	373	0.97
8	16	0.00034	0.013	15.7	0.2	1	23	378	401	378	401	0.96
9	16	7.9e-05	0.003	17.7	1.1	1	23	424	446	424	446	0.99
10	16	1.9e-05	0.00072	19.7	3.2	1	23	451	474	451	474	0.97
11	16	0.001	0.039	14.2	2.4	1	23	495	519	495	519	0.97
12	16	0.0012	0.047	14.0	0.8	1	23	525	547	525	547	0.94
13	16	1.1e-05	0.00041	20.4	0.9	1	23	553	575	553	575	0.99
14	16	3.3e-06	0.00013	22.1	0.2	1	23	581	603	581	603	0.98
15	16	0.0014	0.052	13.8	1.5	1	23	609	631	609	631	0.96
16	16	1.8e-05	0.0007	19.7	0.6	1	23	637	659	637	659	0.98

Sequence Information

Coding Sequence: atggagtttaatttcaattctaTATGCCGCACCTGCATGGGCGAAGTGCCCGATTTGCATTCAATCTACGAAAAAGAGACCATTAAGAAGCTAAAAGTTTGTTGTGATGTACAGGTGTGGGAAAACGATGGTTTACCTGCAAAAATCTGCCAACTTTGTCTCACGGAGGTCGAACAAGCGTTCACATTTCGCGAGCGCGTCAAACGTTCCGACATCTCGTTGCGTCAAATCCTCCGTTCGACCAAAACTGTCGTCAAAGCGGAGCCGAACGAAGTAATGGAAGTGGAATATCTCGAATTCGAGGGCGGTTTTCAGGATGCCGACCAATTTTCCGATGCCGAAGAGAAAAGTTCGCCCGAGGAGTCGAAGGAAAATGCCGTTCTCGCGAATGTCAAGTGCGAGCTGGACGAGTATCAGACGCAATTCAAGTGCACCGAGTGCGGGCAGTGTTTCCGCGATAAGCGAACTCTCGTGCGGCACGGTTACGTTCACATGCCGAAGCAGTTCAAGTGCACGCAATGCGATAAATCGTACAATCGTCCGGATAAATTGACGGCTCACATGCGAACGCACACAAATTACGAGTGTTCGGCGGAGGAAGAAGCCCGAAAAACGGTTCCTGGTGCGCCCTACGAGTGCGAAAAGTGCGGCGAAACGTTCAAAGCGAAACGCTCGTTGCGAACGCACTTTTACGACAGCAAATGCGCGATGCAGTTCGAATGTCAAACCTGTCACAAAGTCTTTGCGAACCGCAAAAATTACTTCCGGCACCGCGCGACGCACGAAACGCCCGAATTCGCTTGCAATTTATGCGACAACAAGTTCATGCGATCGTACGAACTGAAGCGGCATCTCAAGGAACACGGCGTCAACGTAAAATCCGAAGAAACCGAGAGCGAAGCAGACTCCAGCGACGAAGATTGGAACAAGGAAGGATCGGGCCGGGGACGTCCTTCAGCGCGTTATCAATGCGAATCGTGCAAAGTGAATTTCGCTTCGGAGAAATATTATCGCCTGCATTTGGACAACAACAAGTGCGGAAATGAGCCGTACACGTGTCAAGTTTGTCACACCGTTTTTTCCGGCAAGAAGGCGCTGCGACGACACTCGTACACGCATACCGCCGAGAGGTACGATTGCGATTTGTGCGATCGGGATTTCGTTAGACCCGATTTGCTCGTTTATCACAAGAAACGGGATCATAATGTCGTGACAGATGCGGCGCAATTGGCGCACGATACGACACTGGATCCGAACGAGTTTGGCGTTTATCAGTGCCAAGTGTGCTCGGCAGTACTAAAAGACAGGCGGAACTTGAAGCGGCATTATCAGATGCATTCGGACATTAAATTCAAGTGCACGCTTTGTAATAAGGAATACAACCGTCGCTACGAAATGAACAAACACATGAGACAAATGCACGGACAAGAAGGTCCCGCaccgaaaatcatcaaaaaagagAAGGAACCGAAACAGGAAATCTACAAATGCGAACATCCGGGATGTAATAAGGAGTTTACGAAGCGTTACAAGTACAAGGAACACTTGGCAGTCCATTCGGATGTTCGTCCCTTCCTCTGTGGGCAATGCGGACAAGCTTTCAAGAACAAACAAACGTTCCTCAATCACGAAATCCGGCATGGAGACGTCAAACCGTTCAAATGTGAGGAATGCTCGAAAGGATATTACACGAAAAAAGACTTGGCGGTCCATTTAAGAAGTCACACAGgcGAAAAACCGTACGTTTGCACGGAATGTGGCGCCAGCTACACAAGAAGTGATTCTTTAGCTAATCATTGGAAGAAACATACAGgagaACGCCCCCACGCTTGTGAATTTTGTCCCAAGCGGTTCATAAAAGGAGAGAAACTTAAGATTCATCGTCGGATTCACACAgGAGAACGTCCCTATGCATGCTGGATCTGTGATCAACGGTTCACCCAAAAGTACGACATGGTCAAACATGCGCGTCGTCATCAAGAATATCATGCACCGCCTAACACGACAGtcgttttgaattaa
Protein Sequence: MEFNFNSICRTCMGEVPDLHSIYEKETIKKLKVCCDVQVWENDGLPAKICQLCLTEVEQAFTFRERVKRSDISLRQILRSTKTVVKAEPNEVMEVEYLEFEGGFQDADQFSDAEEKSSPEESKENAVLANVKCELDEYQTQFKCTECGQCFRDKRTLVRHGYVHMPKQFKCTQCDKSYNRPDKLTAHMRTHTNYECSAEEEARKTVPGAPYECEKCGETFKAKRSLRTHFYDSKCAMQFECQTCHKVFANRKNYFRHRATHETPEFACNLCDNKFMRSYELKRHLKEHGVNVKSEETESEADSSDEDWNKEGSGRGRPSARYQCESCKVNFASEKYYRLHLDNNKCGNEPYTCQVCHTVFSGKKALRRHSYTHTAERYDCDLCDRDFVRPDLLVYHKKRDHNVVTDAAQLAHDTTLDPNEFGVYQCQVCSAVLKDRRNLKRHYQMHSDIKFKCTLCNKEYNRRYEMNKHMRQMHGQEGPAPKIIKKEKEPKQEIYKCEHPGCNKEFTKRYKYKEHLAVHSDVRPFLCGQCGQAFKNKQTFLNHEIRHGDVKPFKCEECSKGYYTKKDLAVHLRSHTGEKPYVCTECGASYTRSDSLANHWKKHTGERPHACEFCPKRFIKGEKLKIHRRIHTGERPYACWICDQRFTQKYDMVKHARRHQEYHAPPNTTVVLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -