Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.6e-06 0.0021 17.9 1.0 13 43 2 29 1 30 0.93

2 10 1.8 2.4e+03 -1.5 3.1 18 44 39 61 33 61 0.73

3 10 0.00098 1.3 8.9 3.2 6 39 55 82 50 87 0.74

4 10 0.0068 8.7 6.2 1.5 19 30 91 102 83 113 0.82

5 10 0.0014 1.8 8.4 8.1 14 44 116 142 107 142 0.92

6 10 0.03 39 4.2 0.2 18 40 148 167 145 172 0.87

7 10 0.0046 5.9 6.8 2.5 17 43 176 199 170 200 0.81

8 10 0.083 1.1e+02 2.8 2.0 18 27 206 215 201 233 0.83

9 10 0.015 19 5.2 0.2 18 33 263 275 254 286 0.73

10 10 0.0002 0.25 11.2 2.2 18 43 291 313 287 314 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.6e-06	0.0021	17.9	1.0	13	43	2	29	1	30	0.93
2	10	1.8	2.4e+03	-1.5	3.1	18	44	39	61	33	61	0.73
3	10	0.00098	1.3	8.9	3.2	6	39	55	82	50	87	0.74
4	10	0.0068	8.7	6.2	1.5	19	30	91	102	83	113	0.82
5	10	0.0014	1.8	8.4	8.1	14	44	116	142	107	142	0.92
6	10	0.03	39	4.2	0.2	18	40	148	167	145	172	0.87
7	10	0.0046	5.9	6.8	2.5	17	43	176	199	170	200	0.81
8	10	0.083	1.1e+02	2.8	2.0	18	27	206	215	201	233	0.83
9	10	0.015	19	5.2	0.2	18	33	263	275	254	286	0.73
10	10	0.0002	0.25	11.2	2.2	18	43	291	313	287	314	0.87

Coding Sequence: atgaccaaaaattcagtaatttgcAATTATTGCAACGAAAAACTTCGTTCGAGAGAAGGACTTGCTAAGCATTTGGAGCGCTTTCACTTAAATCGCAACGATCCAAATGCCAAGGAGTGCAGCGTTTGCCGAAAATGCATCCCAAAAACACTCATGAAGCGGCATTTCGAGAAGGAACATCAAGAacgaaaatgcaatttttgcgaaaaagtTTATTACAGGGAACATGCTTTTAACCAACATTTGGCGACGCATCgtgaagaatatttttgtgatcATTGTGGGAGAAAATACGTACGAAAACACGATTTGGCGAAACATATTCTCGTTGTGCATTTTGGAAAtcgaaaattagtaaaatgtCACATTTGTAACAAGATGCTAACAAAAGGTTGCTTAGATCGTCATATCAAAACAACTCACAAGAAAATCTTCGATTTCGAGTGCGAAATGTGCAAAAAACGTTTTGTCGACGTCACACAACTCCGCAATCATTTGGCGCTCGATCATCTGGGAGAAGAACTTTACAAATGCgaaatttgtgagaaaaatttcaattcacaaTCCCATTTAACGATTCACATGAATGGCTTTCATCAAGCGGTTCCCCGTACAAAATGcgaaatttgcgaaaaaaccTTCACACTTCCGCGACATCATCAGCGACACATGAAATTGCACGAAACGAAGCATTTTTGGTGCCCAAAATGCCCGAAAATGTTCGAAACGCAGAAAAAACTCGACAATCatacaaaagtttttcataatcCGGCGAAAGTTCGATTGAATTGTGACAAATGCGATAAAACGTATGCGCGAAGTGAAATGCTCCAAATTCACATAAACAACGTACATCTTGGACTGAAGCCCGAATGTCATCATTGCGGAAAGAAATACACGCAAAAGGGACAAATGAAGAGACATTTACTGAAAGAGCATTTTGGAAAcgctaaataa
Protein Sequence: MTKNSVICNYCNEKLRSREGLAKHLERFHLNRNDPNAKECSVCRKCIPKTLMKRHFEKEHQERKCNFCEKVYYREHAFNQHLATHREEYFCDHCGRKYVRKHDLAKHILVVHFGNRKLVKCHICNKMLTKGCLDRHIKTTHKKIFDFECEMCKKRFVDVTQLRNHLALDHLGEELYKCEICEKNFNSQSHLTIHMNGFHQAVPRTKCEICEKTFTLPRHHQRHMKLHETKHFWCPKCPKMFETQKKLDNHTKVFHNPAKVRLNCDKCDKTYARSEMLQIHINNVHLGLKPECHHCGKKYTQKGQMKRHLLKEHFGNAK

Sequence clustering based on sequence similarity using MMseqs2