Cbre005492.1
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- -
- Assembly
- GCA_036172545.2
- Location
- CM070086.1:5625783-5627135[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0016 2.1 8.2 0.7 12 27 79 94 69 107 0.82 2 10 0.0096 12 5.8 1.4 13 29 108 124 100 136 0.74 3 10 0.27 3.4e+02 1.1 0.1 18 41 146 166 143 168 0.76 4 10 0.00067 0.87 9.5 1.4 18 44 180 203 174 203 0.93 5 10 0.00047 0.6 10.0 0.3 14 29 207 222 204 233 0.83 6 10 2.6 3.4e+03 -2.0 0.2 14 22 240 248 228 251 0.79 7 10 0.028 36 4.3 1.1 12 28 265 281 256 289 0.74 8 10 0.012 16 5.4 3.4 13 29 295 311 281 321 0.86 9 10 0.00063 0.81 9.6 0.5 15 43 325 350 313 351 0.84 10 10 3.6e-06 0.0047 16.7 2.6 12 43 354 382 348 383 0.89
Sequence Information
- Coding Sequence
- ATGAGCTGCGTTTTGGACGTCTCAGCGCTGTACCATTTACGTGTAAAAATCCCCAAATATCAAGCGGAGCCCGTCGTGAAGCCAAATTCAGTTGAAAATCCATCAATTCGTCGCTTTCAATGTTGTGAAAAGCTATTTTCGGACCTCTCAAGTTTGTGTTTGCATCAAATGAGTCACGAAAAGGAGAAAACTCCCTTTGAAAAGTTCCTCGAGAACGAAAATAAGCGCGAAGGACGACAAAAATCCAAGTTGGAATGCAATTTTTGCGGAAAATTGCTGAGTTGCGAGGCGGCGAGAAAAGTTCATGAGCGAACGCAGCACAAGGAAGGCGGTCACACATGCAAATATTGCGGAAAATTCTTCGGGATCAAAGTTAATGGCTTGACACATGAGAAAAGGATGCATCGGATGGAAGAAAGTCTCATCACGCCCTTTAAATGTGAGATTTGCGAACAAGGATTTACCAAAgAATTTAACTTCGATCAACACATGAAGAGACACAAAAACGGCGAAATTGACGACTTGAATTCCGAGCAAACGTGCGAAACGTGTCAAAAAAGCTACAAATCCAAGCGAGACTTGAACCGACACATTCGCCGGATGCACCAATCGAGTCTCTGGACCTCATATACGTGTCAATATTGCGGCAAATTCTTCTCCCGTAAGGCAGATGGACAAGTTCACGAACGAAAAGTGCATCGACAACTCGTCGAAAGTTCAAAAGAATTCAAATGTCAGTTCTGCATTCGTGGCTTCGATACCGAAAAATATCTCCAATTGCACGAGGACAACCACAAAAACGGAGAATTGACGTGCAAAACATGCGGCAaggaattttattatcaagCTCAGTGCAAAAcgcatgaaaattattgcggcgaagaagaagaaaaatacatTTGTCACTATTGCAGCAAAGAATTTGCCCGAAAAGGTGCCTTGTTACCGCATTTTGCGAgtcattttgatatttttaaattttcttgtgaGCAGTGTGGGAAATCTTTCAAGCGGAAAGAAGCTCTAAAAAGACATCTTGTGGCATTACATTCGGAAATTAAGAAGACCCAAACGATACAATGTGAGATTTGtgcgaaaattttgtcaagCACGGCGGCGTTGAAGAGACATATGAAGCAAACTCACGATGCGGGAACGAAAATCGTGAGCGACGAATATGAACAGGTcgaaattttgcatgaaaatgagGAGAAACGGGAATTTTTTGTGGTAGAAGAGCAAGATGTCGCACAGACAATCGAAGTTTATTCATTCATGATCGTAGATAGTACTTAG
- Protein Sequence
- MSCVLDVSALYHLRVKIPKYQAEPVVKPNSVENPSIRRFQCCEKLFSDLSSLCLHQMSHEKEKTPFEKFLENENKREGRQKSKLECNFCGKLLSCEAARKVHERTQHKEGGHTCKYCGKFFGIKVNGLTHEKRMHRMEESLITPFKCEICEQGFTKEFNFDQHMKRHKNGEIDDLNSEQTCETCQKSYKSKRDLNRHIRRMHQSSLWTSYTCQYCGKFFSRKADGQVHERKVHRQLVESSKEFKCQFCIRGFDTEKYLQLHEDNHKNGELTCKTCGKEFYYQAQCKTHENYCGEEEEKYICHYCSKEFARKGALLPHFASHFDIFKFSCEQCGKSFKRKEALKRHLVALHSEIKKTQTIQCEICAKILSSTAALKRHMKQTHDAGTKIVSDEYEQVEILHENEEKREFFVVEEQDVAQTIEVYSFMIVDST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00403057;
- 90% Identity
- iTF_00403057;
- 80% Identity
- iTF_00403057;