Basic Information

Insect: Culicoides brevitarsis
Gene Symbol: rps27
Assembly: GCA_036172545.2
Location: CM070085.1:35330789-35335180[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.5 4.6e+03 -2.5 0.9 6 24 10 34 7 38 0.70

2 9 5.6e-12 7.3e-09 35.3 2.8 2 43 133 178 132 179 0.94

3 9 5.6e-08 7.2e-05 22.5 2.1 1 43 203 255 203 256 0.96

4 9 1.5e-06 0.0019 18.0 0.3 5 43 303 346 299 347 0.88

5 9 1.9e-06 0.0025 17.6 0.1 6 44 402 444 398 444 0.90

6 9 5.6e-06 0.0071 16.1 1.1 1 43 479 537 479 538 0.91

7 9 1.9 2.4e+03 -1.6 0.3 18 25 610 617 609 619 0.89

8 9 0.58 7.5e+02 0.1 0.1 18 28 666 676 662 689 0.82

9 9 7.8 1e+04 -3.6 0.0 14 25 865 876 861 877 0.74

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.5	4.6e+03	-2.5	0.9	6	24	10	34	7	38	0.70
2	9	5.6e-12	7.3e-09	35.3	2.8	2	43	133	178	132	179	0.94
3	9	5.6e-08	7.2e-05	22.5	2.1	1	43	203	255	203	256	0.96
4	9	1.5e-06	0.0019	18.0	0.3	5	43	303	346	299	347	0.88
5	9	1.9e-06	0.0025	17.6	0.1	6	44	402	444	398	444	0.90
6	9	5.6e-06	0.0071	16.1	1.1	1	43	479	537	479	538	0.91
7	9	1.9	2.4e+03	-1.6	0.3	18	25	610	617	609	619	0.89
8	9	0.58	7.5e+02	0.1	0.1	18	28	666	676	662	689	0.82
9	9	7.8	1e+04	-3.6	0.0	14	25	865	876	861	877	0.74

Sequence Information

Coding Sequence: ATGAGCTCGAATAACATCTTAAAGCGCTATTTTTGCCGCTTGATCGACGAAAATCAACCAGAATTAAGCGAATCGACAGTTTGTTGTGTGAAATGTCATCAACACGGAAAGATTAGAagatttgaTGCCTCTGCCGAGACTCTCCAACACGATCACTTGTTCGAATTTCACGCAATTATCGGAAATCAACCCACAGAGTACATTCTTGGCACAGAATTACTCGAATCGCATCACCCCGAAGACGAAATTGTCGATGAGGATGACGGCGAAATCGGTCAAATTCAGTATACGGACGAAGATGTTGTCGAAGTTGAGTTTGTTCAGCAAAGCATCGATGGCGAAGAGATCATCCAAGAAGCGAATGACGCAAAAGACGCCTCAATTGTGCGACATTCGGGCGTTTGGAACTATTTTGAGGAAAATACAGCGGAGCAAAAGGTTCATTGCTTGTTGTGTCGCCAAAATAACGTGAGTCACAGCTACAGCACGAACAGCAGCACGTCAAATTTGCGAAAACATCTGAAGACGGCGCACGAAATCGAGGTCGAAAACTACAAACCACTCATGCGAAAgggaaaaaatgacgaaaaacgaGGATACGGGATTAGCAGAGTGTGGAAATACTTTTGCAAAGTCAagaaaaatggagaaattCAAGATAAGGACTACGTTTATTGCGCGGAATGCTTGAAAAAAGGCACGCAACATCGCTACAAGCAAACGAGCAGTACAGGAACGCTTCGTCAACACTTAAGATCGCAACATGATATTGACTTGGATGTCGGGCGGGAGTATTGTGAGACTGCCCAAATGGTTAATATCGAAAATATCGTCGCTGTTGGACTTGaagcaaGTCCCGTAAAAATGCACCGAAAAGGCAAAACAAAGAAACTCAGTTCAGCTCGTTCGTATTACAGCGACGTGCCAGATGACGACGAATACGTTTATTGCACTCTTTGTTCCGCCGAGAACCGAGTTCACAAATATCGCaagtcgacgtcgtcgtcaacGCTTAAAACGCATCTCGTGCAAAAGCATGAAATCGATCCGGATGCCGAAGAAGCGGAAAATAGCAAGAAAAATATCGAAGAAGGGGAAATTCTTGATGGCACGGAAGCCGTTGTTGAAGTTTACAGCTTCGATGAGGAAATTCTCGAGCGAGCACAGAAAATCACATCAATCAAAACGCGTAAAATTCGAACTTATTTCTTCCGACTTGAGGATGAGGAGGTTTTTTGTTGCGCTTTTTGCATTTTGGATGGTATTAAAAAGGCCTACAAGCCAACGACATCGACTTCGGGGCTTCGGAGACACTTGATGTCGGCACATCAACTTGATCCGCTGGGGTATTTCAAGAGCGAAGGTGACACGGAAGTCACGCTGAACGAAGAACAGATCGCGGAAAGTATCGCTGGCAAGAATAAAGCGAAAGAATCCGACGTTTGGAAGTATTTTTGTAAGAAAGAAGTCATGAAAGAGGATTCGTCCtttgaaattgatgaaaattatatttattgctCTCTCTGTTGGAACGGACCAACGCGACAAATTCACAAATATAAGACAACAACGTCTTCCGGGGCGCTAAAAAGACATTTAGCATCGCGACATGGACTGCAAATCCTCAATCGGAGAGTAAGATCGATGACAAATACGACAAAAACTGATGCCGAAGAGACGCAGGAGGAAGATCACATcatcgaagaagaagaacagcAACAAGAAGAAGTCTTTTACGAAGAAGTCGAAGTCGTTTCgcaacaaaaatcacaaaatccgCCAACAATTGTGAGAAAACCTCAACCAAATCCGATAAAACTCCCGAAATATTGTCGTTCATGCGGTAAAACCGACGCTGGATTCTTCACAAAACTCACAGCAGTATTCGACGATGCCGATTGCAACGACGAAAATCCCGAGCAAATCTCCCTTTCGGAACTTTACTTCCAAATCACAGGCATTCGCGTTCGCCCCGACGACGGAATGTCCCAACTCGTGTGTTACCTTTGCGAAGCGAATCTCAAGTCAGCCTACAAGTTCCGGAAAATAGCTTTGGAAACGGAAAACGACAtgatacaaaaactttttggcGACCAAACGGAAACCGATGACTACGAAGTACTCGAGGAAGTTTATCTGGATGACGAAGATCCGCCCGACGATAAAGTCGTGTATCGAAAAGTCACGCAACACCCgggaaaaagtcaaaaattcatcacagTAATATCAAAAAGACACGAAAAACTACCGGAAGAAGATCAGGAAATAACGTTGGCGAATTATGAGACGGCAGATGGACAAGAAATTGAGTATGAAGAAGAGTATTCGGCATCGATGTCGAAACGGAAAAAGAACGAAGGGTTGATGGATGAGATGTTTTGGGATGGATatgaagtgaaaaatgatgCGGCGAAAAGGCAAAAACGGAtatcaagtgaaaaaaataaaTTAGCCAAGGACTTATTACACCCGCTCCCAGCGGAAGAAAAACGCAAGCACAAGCTAAAGCGTCTTGTACAACACCCAAATTCATACTTTATGGATGTCAAGTGTCCCGGATGTTATAAAATCACCACTGTGTTTTCACATGCCCAAGGAGTTGTCGTCTGCACTGGATGCTCAACGATCTTGTGCCAACCAACTGGCGGACGGGCTAAACTCACAGAAGgATGTTCATTCAGAAAAAAGCCCTATTAA
Protein Sequence: MSSNNILKRYFCRLIDENQPELSESTVCCVKCHQHGKIRRFDASAETLQHDHLFEFHAIIGNQPTEYILGTELLESHHPEDEIVDEDDGEIGQIQYTDEDVVEVEFVQQSIDGEEIIQEANDAKDASIVRHSGVWNYFEENTAEQKVHCLLCRQNNVSHSYSTNSSTSNLRKHLKTAHEIEVENYKPLMRKGKNDEKRGYGISRVWKYFCKVKKNGEIQDKDYVYCAECLKKGTQHRYKQTSSTGTLRQHLRSQHDIDLDVGREYCETAQMVNIENIVAVGLEASPVKMHRKGKTKKLSSARSYYSDVPDDDEYVYCTLCSAENRVHKYRKSTSSSTLKTHLVQKHEIDPDAEEAENSKKNIEEGEILDGTEAVVEVYSFDEEILERAQKITSIKTRKIRTYFFRLEDEEVFCCAFCILDGIKKAYKPTTSTSGLRRHLMSAHQLDPLGYFKSEGDTEVTLNEEQIAESIAGKNKAKESDVWKYFCKKEVMKEDSSFEIDENYIYCSLCWNGPTRQIHKYKTTTSSGALKRHLASRHGLQILNRRVRSMTNTTKTDAEETQEEDHIIEEEEQQQEEVFYEEVEVVSQQKSQNPPTIVRKPQPNPIKLPKYCRSCGKTDAGFFTKLTAVFDDADCNDENPEQISLSELYFQITGIRVRPDDGMSQLVCYLCEANLKSAYKFRKIALETENDMIQKLFGDQTETDDYEVLEEVYLDDEDPPDDKVVYRKVTQHPGKSQKFITVISKRHEKLPEEDQEITLANYETADGQEIEYEEEYSASMSKRKKNEGLMDEMFWDGYEVKNDAAKRQKRISSEKNKLAKDLLHPLPAEEKRKHKLKRLVQHPNSYFMDVKCPGCYKITTVFSHAQGVVVCTGCSTILCQPTGGRAKLTEGCSFRKKPY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -