Cbre002418.1
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- SMARCC2
- Assembly
- GCA_036172545.2
- Location
- CM070085.1:23613808-23617482[+]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.65 6.7e+02 0.3 0.0 33 44 197 208 192 210 0.86 2 2 2.4e-14 2.5e-11 43.3 0.2 3 44 620 661 618 663 0.95
Sequence Information
- Coding Sequence
- ATGGTAACGTTAGGACCAAAGAAAGACGGGGGACCTAATATTGACTTCTTTCAGTCTGCTGAATCATTGCAAGGATTCGAAAATGTTAGAttgtatttacaaaaaaactgtaaaaagCACATACAAGCAGATCCGCCAACAAAAGAGAGTCTCAGTCAATTaatcattcaatttattcagTATCAGGATTCAAAATTGGGTAAACATACATCAGATGCTCCGGTCACACGGCTTcctATGCGATGCTTCTTAGACTTTAAATCTGGAGGAGCcctttgtcaaattttatctgTAATGTATAAATACAAAGCGGAACAAAGATggagaaaatttgattttatgAACCAAGGAAGAAAAGAACCATTAGTACAGATGTTAATTGACATTGAAGGAGCATTATCAGAAGCGGAAATTCTCCGTTATCCAATAGTCTTTATAAAACCAGAAGTAGATAAGACATTATCGGCGAAAATAAAGGATATTATTATAGGTCGCCAAGGTGAAATAGttgatgatgaagaagaagcCACACACATTATATTTCCTACAGTTGATCCCCTTCCTGATGAATATGCTCGAGTTGTATTTAAACGTGACAAACATGTTATGCTTCATTGGTATTATTTACCTGATTCATATGATTCATGGGTTCCAAATTTGTTCGATTTGCCGGAGCAAGTTCCAGACAATCCAATGTCACCTGGTGATAAACGTTGGTTACTCTCTGCATCGTGGGTCTTAGACATAGAACAATATAACGAATGGATGTCGGAAGAAGATTATGAAGTTGATGAATttggaaagaaaaaagtgCATAAACTTCGCATTGGTGTAGATGAACTTATGACTGCAACTGTCGATgataaatcaaagaaaaaatctattgataaaaaaagaaaacgatCACCATCTCcacaacttaaaaataaaaggaagagTGGACGATCACCAGCagtatttcagaaaaaaactcGGGCAGAGGATGAAGAAGGTGAAGACTTGACAAAAGATATGGAGGAACCACAGAGTGAACCCAATATCACAGAAGTTAAACCTGGCACAAGTAATACGGATATTGCCACATCTAATATGAGTAAAAAGGATGGCGATTTAATGCctattaaaGGGGCAACAGTAACCGATTTAGATGAGGAAGCTGATCGTGGTGATGATTCTCAACAAGGaaaattgagtgaaaattCTAATACCCaagattttaaagcaaatgATGATTTAGAAGACAACGTAACTGAACAAGCACATCATATTATTGTTCCATCATATTCAGCTTGGTTCGAATATTCTTCTATTCACGTGGTTGAAAAGCGAGCCCTGCCagaatttttcaatggaaaaaacaaatcaaaaactcCTGAGATTTACCTAGCTTatcgaaattttatgattgaCACCTATAGGTTAAATCCTACAGAATATTTGACTAGTACGGCTTGTCGTCGAAATTTAGCTGGAGACGTGTGCGCTATAATGCGTGTACATGCATTTTTAGAACAATggggtttaattaattatcaaatagATTCTGAAGCCCGACCTACCCCAATGGGACCACCACCAACTTcgcattttcatgttttaagcGACACGCCATCTGGGTTACAACcaataaatgtacaaaaaactccGCAGCCATTTGCTGCAAAAAATCTATTGGATCTAGAAAGAAAATATaactctgaaaaaaaagacagTGAATCCACACAAGGTTCCAATGAATCAACACACAAAACAGAGTCGGGAATATCAGATACTAGTGGTCAATTTGGACTAAAATTGGAtcaatattctaaaaaacCTCAAGTGATGCGAAATAAAACAGCGGCAGGTATCAACCGAGAATGGACAGAACAAGAAACTCTTTTATTATTGGAAGGTTTAGAAATGTTCAAAGACGATTGGAATAAAGTTTGCGAACATGTCGGTTCTCGCACGCAAGATGAATGTATCTTACATTTTTTGCGTTTACCAATTGAAGATCCTTATTTAGAAGACGAAAATCTATTTCTTGGCCCATTATCATTTCAACCAATACCATTTAGTAAGGCTGGTAATCCAATAATGTCAACCGTAGCTTTTTTAGCTTCAGTGGTAGATCCTCGAATAGCTGCAAGTGCAGCAAAAGCTGCGATGGAAGAATTCTCTACTATAAAGGATGAAGTACCGGCAAACATGTTggatgcacatttcaaaaatgttgaaaaatctaCACAGAGTGGAAAGTTCGATCCTTTTGCTGGATTATCAATGAGTGGAATTGCTGGTACTGGATCCGATAAGGATAAAGATGATGAAGAACAAAAGACTAATACAtcaacaaatgaaaattttataaaagaagATGTCCAAAAAGATAATGAAATCGTTCAAACTAAAAAGTCCACTGAAAAAGGtgtaataaaagaagaaacagGCGCAGATAACGCACACGATCCATCTGAGATTCATGATAAACAAGAAGCTGacacaaaaacatttaatgaaGCTAATATACaaacagcagcagcatcaGCATTAGCAGCAGCAGCTGTAAAAGCTAAACATTTAGCTGCTGTAGAggagcgaaaaataaaaagtctgGTAGCACTTTTAGTAGAAACACAAATGAAGAAGCTTGAGATTAAACTTCGACATTTTGAGGAACTCGAAACAACAATGGAACGAGAAAGAGAAGGACTAGAATATCAACGTCAACAATTAATACAAGAAAGACAACAATTTCACCTAGAACAATTAAAAGCTGCTGAATTTAGAGCTCGTCAACAAGCACACCAACGTTATCAACAAGAACAGGGACATTGGCAAGGTCCACACCAAACATCAGGCTCTCTTCAAAACAATGCTCCTCAAAACGAGACATTATCCAGCGCTCAGCAAAGTAATCTATCTACCCTAGCAGGACAAACTATAATGtccaactaa
- Protein Sequence
- MVTLGPKKDGGPNIDFFQSAESLQGFENVRLYLQKNCKKHIQADPPTKESLSQLIIQFIQYQDSKLGKHTSDAPVTRLPMRCFLDFKSGGALCQILSVMYKYKAEQRWRKFDFMNQGRKEPLVQMLIDIEGALSEAEILRYPIVFIKPEVDKTLSAKIKDIIIGRQGEIVDDEEEATHIIFPTVDPLPDEYARVVFKRDKHVMLHWYYLPDSYDSWVPNLFDLPEQVPDNPMSPGDKRWLLSASWVLDIEQYNEWMSEEDYEVDEFGKKKVHKLRIGVDELMTATVDDKSKKKSIDKKRKRSPSPQLKNKRKSGRSPAVFQKKTRAEDEEGEDLTKDMEEPQSEPNITEVKPGTSNTDIATSNMSKKDGDLMPIKGATVTDLDEEADRGDDSQQGKLSENSNTQDFKANDDLEDNVTEQAHHIIVPSYSAWFEYSSIHVVEKRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQIDSEARPTPMGPPPTSHFHVLSDTPSGLQPINVQKTPQPFAAKNLLDLERKYNSEKKDSESTQGSNESTHKTESGISDTSGQFGLKLDQYSKKPQVMRNKTAAGINREWTEQETLLLLEGLEMFKDDWNKVCEHVGSRTQDECILHFLRLPIEDPYLEDENLFLGPLSFQPIPFSKAGNPIMSTVAFLASVVDPRIAASAAKAAMEEFSTIKDEVPANMLDAHFKNVEKSTQSGKFDPFAGLSMSGIAGTGSDKDKDDEEQKTNTSTNENFIKEDVQKDNEIVQTKKSTEKGVIKEETGADNAHDPSEIHDKQEADTKTFNEANIQTAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLIQERQQFHLEQLKAAEFRARQQAHQRYQQEQGHWQGPHQTSGSLQNNAPQNETLSSAQQSNLSTLAGQTIMSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -