Cbre013633.1
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- lolal
- Assembly
- GCA_036172545.2
- Location
- CM070087.1:34458734-34460755[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.9e-09 1.4e-05 24.5 0.0 1 38 344 380 344 385 0.91
Sequence Information
- Coding Sequence
- ATGGCTGAAACAGACCCATCTCAACAGTATTGCGTACGATGGAACTCCCATTTGTGCAGTTTGAGTACGGCATTCCCGCAGTTGTTGGACCAAGAGAAGTTTGTCGATGTAACCTTAGCTTGCGAAGGGCAACAAGTGCATTGTCATAAAGTAGTTCTTGCTGCCTGTTCTCAATATTTCGACAACTTACTCAGTGAAAACCCGTGTAAACATCCCATTATAATTCTTCCGAGTGATATCAAGCTGTGGACCATTCAGGCACTCGTCGAGTTCATGTACAAGGGTCAAGTGAATGTTTCGCAAGCTGGTTTGCCGGATTTAGTCAAAAGCGGCGATTTGCTGCAAATTCGGGGGCTTTGCAACACCGACATTGGCTTGTCTGTGGAAAATGGCTCGGAAGTTAGTAAAGTGCCAACGAATGCGACAACAACATCTCCCGCCGCTTCAGTGAGAAAAGAATCGGAACGAGTCTCAGAAGATCAAGAATCGACGATTAAGACAGAAACTTACGATTTGGAGGATGAAGAAGTCACGGATGATCCCAAAAAtccagaaaaaacgtCTTTCAAGTCAGTTACAATCACGCAAGTTAAGGCGAGTACTTCCTCGGGCCAAATTCGTGTCAGAGcacgtgaaaatttatttgaaaattacaaaaaggcAGAAGTTGAACCCGAAGAAGACGAATACGAGATGATTCAAGTGACGCCCGACACAtttcacgacgacgacggaactGACGATTTGATCATGATGGAGCCCCCAAAGCTGAAATTCAACCAAAATACGatggaagtgaaaaaaatcaacttaggTCAGgctttttccttgaaaaatatCGACGAAGAGAGCTTCTTTAGCATTGACGATGACGAAATTGAGGCAGAATACATCTTGCCGGAAGTGTCGATGATGGAACAAACAACGCAACAAAAGCTTCCGCGACTTTTACCCAAAATTAATTCCGTGCCCATTAAAAATCCGGGAGTTTTGTTGAGACATCCGAGGGCGAATCAGGGCAGAGCGTATACGGAAGAGGAATTAATAACGGCTTTGAATGAGATAAAAGCGGGTTTGAGTATTTATAAGGCGTCGCAAAAGTATCGAGTGCCCCGAAAAACGCTCCGGAATTGGATGAAACGATGGAAAATCAAGTCAGCGCATCCGATGCCGATTCAGTTGCAAAGAGCGGCGATTAAGAGGAAAGAAGAACGGGATCAAAGGTTAGCGAGCATCACAGCAACTCCTAAAATTGAGAATATTAAGACAGATGATGACATTATTATCGTTCAAACTAACACacaatattga
- Protein Sequence
- MAETDPSQQYCVRWNSHLCSLSTAFPQLLDQEKFVDVTLACEGQQVHCHKVVLAACSQYFDNLLSENPCKHPIIILPSDIKLWTIQALVEFMYKGQVNVSQAGLPDLVKSGDLLQIRGLCNTDIGLSVENGSEVSKVPTNATTTSPAASVRKESERVSEDQESTIKTETYDLEDEEVTDDPKNPEKTSFKSVTITQVKASTSSGQIRVRARENLFENYKKAEVEPEEDEYEMIQVTPDTFHDDDGTDDLIMMEPPKLKFNQNTMEVKKINLGQAFSLKNIDEESFFSIDDDEIEAEYILPEVSMMEQTTQQKLPRLLPKINSVPIKNPGVLLRHPRANQGRAYTEEELITALNEIKAGLSIYKASQKYRVPRKTLRNWMKRWKIKSAHPMPIQLQRAAIKRKEERDQRLASITATPKIENIKTDDDIIIVQTNTQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00402875;
- 90% Identity
- iTF_00402875;
- 80% Identity
- iTF_00402875;