Cbre004856.1
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- Klhl40
- Assembly
- GCA_036172545.2
- Location
- CM070085.1:46295265-46296609[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.1e-06 0.0032 16.9 0.0 3 44 223 264 222 265 0.91 2 3 8.3e-05 0.13 11.8 0.1 23 37 293 307 292 309 0.93 3 3 1.8e-12 2.7e-09 36.4 0.0 3 42 333 371 332 373 0.93
Sequence Information
- Coding Sequence
- ATGGATAATTTCGACGAGCACACAAAGGACATTTTGAAGGATGTTTACGAAAACTCGCTGAACTGCGATGTAATATTGCGCGTTGGTGATAGGAAATTTCCCACGCATAAAGCTGTGCTCGCTTTTGGAAGTgactttttgaaagaaatcatCGAAGAAAATACAGCTCTTCAACCCGGACAAACTCCAACAATTAGTATTCCAGAAGTAGATCCCGATATCGTTGAGgaaattctcaattttataTACACAGgagAAACTCGATTGAAAGAAGAGCGTTTTATGGAATTCGTCGATGTTTGTAatcttttgaaattgaaaagcaTGGCGAATTACGAGTATGTTAAATACATAAGTTTTCCTGAGGAAAACGCAACAACGAGTGAACCTGCTGACgtcgaaaataattatattgagAACGTTACGATAATTGGGAATGATTATGCGGAAATAGTCAAGTCTGTAACGCAAGAAGAATCTGTCGCAGAAGAAAGTGAAATGTTATGCGATTCAAATCCGTTAAGCGATCACGCAAATTATGAAGTAATTGAGGTAATTGAACAACAAACGACAGAAGACGATAGCAAAGTCGAGCATAAACTCGAGCCAGGAGCAAAACGAAAGCGCGTTTCAACACATTTGCGCGAAGGCGATCCGCgttacaaagaaaatttagaagCTGCGATGCATGAAGTGATCTATAACAAGGTGAGCTTTAAGACAGCAGCTGAAAAGTACCAATTATCTAAAACAATTCTATGGCGTTTGTGTCAACAATCTCCCGAATATCAATTACAGAAAGATAATCCAGGCAATCAGGAATTGAATCAAACGATTTTAGACGAATTGACAAGCGGCGAAACACTATTAGGCATCAGTCGAAAGTACAATATTCCGGTATCTACGTTACACAGGCGCAAGACAATGTTGTTTGAAAAGGGAGATTTGCCGGAGAGTGTTCGAATTAAACAGAGAAATCGTGGCGAAGATTTTGCCGAGAGACTTGAACAGGCAATTGCCGAAGTCGAAAATGGACTTTCACAGACAGAAGCgagcaaaaaatatcgaattccGAAAACGACAATATGGCGACGACTGAAACGAACAAATCCTCGTTTGGCAAGTGCAAAGGCTGATCAAAGCGTTGACGAATCCTATGAAATCATAAACACGACAATTAAAACGGAAGATTTCAAAGTCGTTAACCCCGatgaatcataa
- Protein Sequence
- MDNFDEHTKDILKDVYENSLNCDVILRVGDRKFPTHKAVLAFGSDFLKEIIEENTALQPGQTPTISIPEVDPDIVEEILNFIYTGETRLKEERFMEFVDVCNLLKLKSMANYEYVKYISFPEENATTSEPADVENNYIENVTIIGNDYAEIVKSVTQEESVAEESEMLCDSNPLSDHANYEVIEVIEQQTTEDDSKVEHKLEPGAKRKRVSTHLREGDPRYKENLEAAMHEVIYNKVSFKTAAEKYQLSKTILWRLCQQSPEYQLQKDNPGNQELNQTILDELTSGETLLGISRKYNIPVSTLHRRKTMLFEKGDLPESVRIKQRNRGEDFAERLEQAIAEVENGLSQTEASKKYRIPKTTIWRRLKRTNPRLASAKADQSVDESYEIINTTIKTEDFKVVNPDES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00402894;
- 90% Identity
- iTF_00402894;
- 80% Identity
- iTF_00402894;