Cbre007989.1
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- -
- Assembly
- GCA_036172545.2
- Location
- CM070086.1:25959041-25975128[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-13 2.2e-10 39.9 0.0 1 39 515 554 515 558 0.92 2 4 2.9e-13 4.5e-10 38.9 0.1 2 39 570 607 569 610 0.94 3 4 6.4e-18 9.8e-15 53.8 0.0 3 45 626 669 624 669 0.97 4 4 6.2e-18 9.5e-15 53.8 0.0 1 42 676 718 676 720 0.96
Sequence Information
- Coding Sequence
- atgcatttttttgtgaaaaatttggaattggCAGCGACACGTGGCTCCGAAGCATTTCAAGGTTACGAAAAACCGGGAGTGAAAAGTCTCCTCAAAACAGCGGaacacttgaaaattaaaggcTTGTGCGAAGTGAGCGACATTGATAATCCCCtggaatatttttacaatccGCGTCAAgcgcatcatcatcaacaatcGTCGTATAATTTGTCGAATACGACGAGACACGCGATTCCGTCGTCATCGGGACATCATTCGAAGACGTTTGAGAAGCGATTGCATAGCACACCGACCAAAGGACGCAAAAGTCCCCGTTTATTGAGTCCCACGAAAGGTGATGGACAATTGATATCTTCGGATACAGAGACAGGAACTGACAAACAGGAGCAACGACGAACAAAAGGAAGTAAAATGGCGAGCTTAGGAATGGGAATGaatggcgGAGTAATGGGTGGCGTACCCATGGGATACTTAGATTTTACACCAGAACCACCGGCTCCCTCTGCCACTCCAGTTACCGAACACGTTGATCTCAATTTAGGACATAGTCATGATACGCGTGATTTGTCAAGTGCCACCCCAAACGGTGAAGTgcgtattaaatttgaaacctTGAAATCACTAGATCCCGCTGAGACGATGGACATTGAAAATCACTTATCACCGCACACAATCACACAGCAGCAGTCccaacagcagcaacaacaacaacaacagcagcaacatCAGTCCAGTTCAACGCCGACTCACATCATGGTGGACCAGCAAAGTCGACACTCGTCCCATCACTCGAACAGCCCGCAACCGCAGCAACAACGGCAAAATTCGTCGCCGCCCGGTGCCGATGACTCGTCCGACCAGCTGGATGTCAAGCCGAACGTGCATCAACTCATGCAAGGTAATACTAACGGTATCACAACTAACAATCATATTCAAATCcatacacaacaacaacaacaacaaacgtcACCCTcacaccaacaacaacaacaacaacatcaccAATTGAGCCAGCACCAGATGCAACAATTGCAGCAACAAATCCAGCAGCAACAtcagcaacaacagcagcagcaaaatttCGATCAAATGAACACTGCCACGATCAATATTGTGGCCTCGCCGTCGAATTTGACGCATAACGGGGTCcccattcaaattttgacgcaTGGACAACCGCTCACGCAATTCAATGGGATTGTCGTGACCACGGCGGATCTTGTCCCGAACATGAATATGATGAATGCCGCGAACGGGATCCAAATGCAGCAGGGTGAAGTTTACAGTTCGGAAAGTGAAGACACAAAATTGAACGACAATTCGCAAAGTAACATGCACTACACAAATCTCTCGAATACATCGGATTCCGTTGCTGTCGGCAACAATGGAACGAATAACGGCACATCCACTCCCACCGGTCGCAAGAACTCCAAAAAGGCAAAACTCGATACGAGTGCTGCCGATGCAAACACCGATGACGGTTCCAATGGATCGACAAATGGTAAAAACGGCGAGGGATCATCGGGACCCAAGACATGGACTCCCGAGGACATGGATGCTGCCTTAGATGCCTTACGTAACCACAACATGAGTCTAACGAAAGCTTCGGCAACTTATGGCATTCCGTCGACAACGTTGTGGCAGCGTGCTCACCGACTTGGCATCGATACGCCCAAGAAAGAGGGTCCCACGAAGACCTGGAACGAAGATTCGCTGAATAGTGCGTTGGATGCGCTACGGACCGGACAAATTTCCGCTAATAAGGCATCCAAGGCGTACGGCATTCCATCCTCGACATTGTACAAAATTGCAAGACGAGAAGGTATAAGACTTGCGGCGCCCTTCAATGCTGCGCCCACAAATTGGTCAGCGGAGGACTTGGAACGGGCACTGGAAGCGATTCGTGCGGGACAAACGAGTGTACAAAAGGCTAGCACAGAGTTTGGAATTCCAactggaacaCTTTATGGACGTTGCAAACGGGAAGGAATTGAGTTGTCACGATCCAATCCAACACCATGGTCAGAAGATGCGATGATGGAGGCATTGGAAGCAGTGAGaatcgGTCACATGTCGATAAATCAAGCAGCAATTCATTACAATCTCCCATACAGCTCATTGTATGGTCGATTCAAGCGCGGACGATACGATAATGGTGCCAATGACTCTCATACCGATCATTCTCCTGATAATACGatgcaATACACCCCACCGCCCCAGATGCAACAACAGCAAATCCACACACAATACCATCATGCTCCGTTGCAACATCAACTGGCATCGCATCACCAGCTAAATACCCACCATCAAACGCAACATCACCACCAAGTTTTACCGTCGTCCAGCCAAGTTGTGCATCACGGCATGAACAACCATCATACAATAATCTACCACGAGACCAGTTGA
- Protein Sequence
- MHFFVKNLELAATRGSEAFQGYEKPGVKSLLKTAEHLKIKGLCEVSDIDNPLEYFYNPRQAHHHQQSSYNLSNTTRHAIPSSSGHHSKTFEKRLHSTPTKGRKSPRLLSPTKGDGQLISSDTETGTDKQEQRRTKGSKMASLGMGMNGGVMGGVPMGYLDFTPEPPAPSATPVTEHVDLNLGHSHDTRDLSSATPNGEVRIKFETLKSLDPAETMDIENHLSPHTITQQQSQQQQQQQQQQQHQSSSTPTHIMVDQQSRHSSHHSNSPQPQQQRQNSSPPGADDSSDQLDVKPNVHQLMQGNTNGITTNNHIQIHTQQQQQQTSPSHQQQQQQHHQLSQHQMQQLQQQIQQQHQQQQQQQNFDQMNTATINIVASPSNLTHNGVPIQILTHGQPLTQFNGIVVTTADLVPNMNMMNAANGIQMQQGEVYSSESEDTKLNDNSQSNMHYTNLSNTSDSVAVGNNGTNNGTSTPTGRKNSKKAKLDTSAADANTDDGSNGSTNGKNGEGSSGPKTWTPEDMDAALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKTWNEDSLNSALDALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTNWSAEDLERALEAIRAGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALEAVRIGHMSINQAAIHYNLPYSSLYGRFKRGRYDNGANDSHTDHSPDNTMQYTPPPQMQQQQIHTQYHHAPLQHQLASHHQLNTHHQTQHHHQVLPSSSQVVHHGMNNHHTIIYHETS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -