Cbre008419.1
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- retn
- Assembly
- GCA_036172545.2
- Location
- CM070086.1:29371791-29403857[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-26 5.3e-23 81.0 0.0 2 89 207 292 206 292 0.96 2 2 3.3 5.2e+03 -2.3 0.0 21 38 368 386 354 390 0.67
Sequence Information
- Coding Sequence
- ATGGACAGTGGTCGACACGATCGAGATTCAGATTTAGGAGACGATTCACCCATGtCACACACAGACGAACACTCGGAccgcgaagaagaagaaatccGGGACTGCGACTCGAGTGACGAAGGCGTTAATGTAAATCCTAGCAATACATTGACAACGGGAATGGATTTTGGCAGAAGTCCAGAACATATTTCAGATATGAGtcATCCATCACCGTTTGCACAAAATCACCCACTAAACTTGCTAAATAATTTGACAGCGCTCGGAATGAGTGCGCAACACTTGCAAAATTTGCCACACAGCGACGTCTTGGAGAAACTGAAGATGCAAGTGCGTGATATGAAAGTCGGTTTAATGGATCCGGACTTTTCGTCGTTGCATGCGGCAGCTGCTGCCAATTATGGGGCTATGAATGCCGCCAATTTCGCACAAAATATGGCACATACTCCGAATGGGTTTGCCTTCCAGTCGCCCACTTCCGGAAATAAAGATGGCAATCCGGCATCAAATTCATCCGCATCGAGCGAAGGCTCTAATTCATCGCAACAGAACAACGGCTGGAGCTTTGAAGAGCAGTTCAAGCAAGTCCGACAACTCTACGAGATAAATGACGATCCAAAACGAAAAGAATTCCTGGATGATTTATtccaatttatgcaaaaaagaggaTCCCCCATCAACCGCTTACCGATCATGGCAAAATCCGTGCTCGATCTCTACGAATTGTACAACCTCGTTATCGCACGTGGCGGTCTCGTCGACGTCATCAACAAAAAACTCTGGCAAGAAATCATCAAAGGACTCCATTTACCGAGCAGCATCACTAGCGCAGCATTCACCCTTCGAACGCAatatatGAAGTATTTGTACCCATATGAGTGTGAAAAGAAGAATTTGAGTACGCCATCTGAGTTGCAAGCTGCCATCGATGGAAATCGTCGTGAAGGTCGTCGATCCAGTTATGGGGCTTTTGGGGATGGTTCCATGCCAACACAACTTCAAatgcaATCACAAATGCAACGAAGCCCAATCCCAAATCTCTCACAAATGTCACCGTTGTCGTTAGTTACTCACAATCAGCACACCGCTAACTTGATGGGAGCCCCGCATGTCCCACAAGACTTTGAGAAACGCATGATCGACTATATCAAGTTGTTCCAATCGCCAAAAGAGCCAAAacgttcCCAAAGTCCCGATCCAATCAATAGAGAAGCAATTAATGCTCTTGAAATGTCACGTTTGGCATTATGGAACATGTACAACAATAATTTGCATCCAAGTCCACCGAATTCACAAAACTCTAGTCCGTTAGAGCatcaaaagcgTTCTTTGTACAACAGAGATCATTTATCGGATTCGCCACCCCCATCGCATCATCATCCGGCTATCAAGCGTGAACGTGATTCATTTACCGACTTTTCGGACAATCGTGAACGTGATTTCTCGTATCCGCCAGAGAAGAAGCAACGTGCGCCTTCGACACCGACTCGCGGAGGACAAAATCATCACTTGGATACGTCCGTGGAGGAACGTTCTGAGACTCCAGTTCACGAAAATGGAACAGATTTGACGAAACCCATGTCGAAATTGAGTTCGGAGGCGAAGAATGGACTCGACCAAGGGATGCCATTGTTGAATGGAATGCAGTTCAAAATCATTAGTAGAGgaaaCGCATCATCTGGCGAACAACAACTCGTTGTCACAATGGAAGTAAATGGCGTGCAGTACGAAGGCGTTCTCTTCGCCAACCAACAATCATCGCAGGAGCATCCCATGACAACGACAGCCAACAAAATGAACACGACACTTAACACGACAGTTAATTCAACCACGAGCAGCATCGATGAACGAAGCGTCGCTCGTCCCCTTATCTCAtcataa
- Protein Sequence
- MDSGRHDRDSDLGDDSPMSHTDEHSDREEEEIRDCDSSDEGVNVNPSNTLTTGMDFGRSPEHISDMSHPSPFAQNHPLNLLNNLTALGMSAQHLQNLPHSDVLEKLKMQVRDMKVGLMDPDFSSLHAAAAANYGAMNAANFAQNMAHTPNGFAFQSPTSGNKDGNPASNSSASSEGSNSSQQNNGWSFEEQFKQVRQLYEINDDPKRKEFLDDLFQFMQKRGSPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPSELQAAIDGNRREGRRSSYGAFGDGSMPTQLQMQSQMQRSPIPNLSQMSPLSLVTHNQHTANLMGAPHVPQDFEKRMIDYIKLFQSPKEPKRSQSPDPINREAINALEMSRLALWNMYNNNLHPSPPNSQNSSPLEHQKRSLYNRDHLSDSPPPSHHHPAIKRERDSFTDFSDNRERDFSYPPEKKQRAPSTPTRGGQNHHLDTSVEERSETPVHENGTDLTKPMSKLSSEAKNGLDQGMPLLNGMQFKIISRGNASSGEQQLVVTMEVNGVQYEGVLFANQQSSQEHPMTTTANKMNTTLNTTVNSTTSSIDERSVARPLISS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -