Basic Information

Insect: Culex quinquefasciatus
Gene Symbol: -
Assembly: GCA_015732765.1
Location: NC:104616590-104619176[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 3.5 1e+02 3.4 0.8 2 19 124 141 123 143 0.94

2 11 0.00025 0.0072 16.5 5.3 1 23 230 252 230 253 0.95

3 11 0.011 0.31 11.3 1.1 2 23 259 280 258 280 0.97

4 11 0.0089 0.25 11.6 7.9 1 23 291 314 291 314 0.97

5 11 4.3 1.2e+02 3.2 0.4 2 23 483 505 483 505 0.89

6 11 3.7 1.1e+02 3.4 1.1 1 23 544 567 544 567 0.95

7 11 0.17 4.8 7.6 3.4 2 23 572 594 572 594 0.92

8 11 0.025 0.71 10.2 1.9 1 20 607 626 607 628 0.90

9 11 0.00093 0.026 14.7 2.2 1 23 633 655 633 655 0.97

10 11 0.13 3.8 7.9 0.5 2 23 662 684 662 684 0.93

11 11 0.026 0.73 10.2 0.1 1 23 718 741 718 741 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	3.5	1e+02	3.4	0.8	2	19	124	141	123	143	0.94
2	11	0.00025	0.0072	16.5	5.3	1	23	230	252	230	253	0.95
3	11	0.011	0.31	11.3	1.1	2	23	259	280	258	280	0.97
4	11	0.0089	0.25	11.6	7.9	1	23	291	314	291	314	0.97
5	11	4.3	1.2e+02	3.2	0.4	2	23	483	505	483	505	0.89
6	11	3.7	1.1e+02	3.4	1.1	1	23	544	567	544	567	0.95
7	11	0.17	4.8	7.6	3.4	2	23	572	594	572	594	0.92
8	11	0.025	0.71	10.2	1.9	1	20	607	626	607	628	0.90
9	11	0.00093	0.026	14.7	2.2	1	23	633	655	633	655	0.97
10	11	0.13	3.8	7.9	0.5	2	23	662	684	662	684	0.93
11	11	0.026	0.73	10.2	0.1	1	23	718	741	718	741	0.97

Sequence Information

Coding Sequence: ATGTCCACGCCGGTAATTTGCCGCGTCTGCACGGCACCGACGCCGCCGGACGCCTCCTGGAACCTGTTCGAGTGCCAGGCGGCCGACGGCTACAGTCTCGCCCAGCTGGTCGCCCTCGTCGGCGACATCGAAGTGCGTCCGGACGAGGCGGACCTTTCGGCGTGGTGCTGCGTCCAATGTCAGCTGGACGTGGGAGCGGCGTACCGGGTGCGGGTGCTCTGCCAGGAGTCGGACCGGAAGCTGCGGGAAATGCTGGAGGCGGCGGTCGTTGAGACCAGTTCGGTTTGCCAGATTGAGGAGGATGAAAAGGAGGAATCTTCCACCTTGCAGCACACGGATGCGTTCGAAGAGATTCCAAACACCAAACAACGCTGCTGCGGGTGCCACCAGCTCTTCGACACCGTTGAGGAACTTGTCGCGCATAGTACGGAGCGATACGCGGTTGCCGAAACGCCAATGGCTACAAAGGACAGAGAGGTTTGCGACGTGTGCTACAGGTTGGTGGGCAAGCGGTACATGGAGCTACACAAGCAGTCACCCAAGACGCTGTTCCGCTGCAAGGCTTGTGGTGAGCTGTTTCTCGCCAAGCGGCATGTCACCAGGCATGCGAAAGTTTGCAGCTCCGGTCAGGTGCATTCGCCCCGGAAGGATCAAGCGAACGAAGGGAGCACCGAAGAGAACGCGACATTCAAGTGTTCGCAGTGTAGGAAGAAGTTTAGAACTCAGAAATCGCTACGTGCCCATGAGTACATTCATCATAATTCGTTTTCCCAAAAGTGTACACGCTGTGCTGAGGTTTTCACCGATTTCAACGAGTACAGGACACATTTGAATAGTCACCGGAAGAATAAACATGATGTTCCAAAAAGGCACCAGTGCTTTCACTGCCCGGCTAGCTTTAATCACAAGAGTAGCATGTCTCGACATGTGAAGAAATACCACCTGGAGATTTCGGCATCCGCAGAGAACAACCACAGCCGAACCGAGGATACCGAGGAAGGTGACGATACGTTTGAAGAGGAAGTTGTCTTCAAGATCGAGGTTGAAGAAGCTACGGTAGAACCGGAAGTTGCCCCAGCATCTACAGGAAGTCGAACCGAGGTTACCGAGAGTGGTGAAGATACGATAGAAGGGAATGTTGTCTTGAAGATCGAGGTCGAAGATCCGGTAGAAACACAAGAGTCTCCCGAGGAAGACGAAGATATGTTTGAAGAAGATGATGTCTGCAAGAACGAGGTTGAAGATCCGGCAAAACCACAAGAGACTCCCGAGGAAGACGAAGATACGTTAGATGCAGTCTGGGAGATCAAGGATGGAAGAAAGGTTGATGTTGTAGAAAGCGagaatgacgacgacgacgacgaagaggcCGAATCTTCAGCAGTGGACGACTCACCAGCTCATGAATCGGAACTTTTCCAGGAAATCAAGGCGGTCGACCAGCGCCGCTGCTGCTCCTGCCTGCTAATCTTCCCCAACGAATCAAGCCTGCTTGAGCACGCTGAACAAGTACATAAAGTTGACGATCCTCCGAAGGAGGACGCAGTCAACAACAAGCTCTGTAACGTCTGCTACAAGTTGATCAACAAAACGAATTACGTCCGGCACGGTAGGCTCCCGAAGACACTATTTCGTTGCACAGCTTGCGATGATCTTTTCTTCTCCAAAAAACTCGTCCTAAAACACTACAGATGGGATCATTACAGCCCGCGGAAATGTTGCACCtgcaaacaaaaattcaaaaccgtAGAAGCCCTTCGCCAGCATTCCAACGAGGTCCACCTCCCAAAAAAGCGCAAACCAGACAAGAACCGCCCGTACAGCTGCAACCTGTGCTACAAAACGTTCAAGAACAAAGGCAGTCGAGACAATCATCGATCGCGAGCGTTCAACTACTTCAGCTGTTCAAAGTGCAGGAAAAGCTTCAGCTTGCTGCGGCAACTCCGGCTGCACGAGGAGACCCACGCGGACCCAACCGTCAACGTCTGCCCGTACTGCGCGAAAGCATTCGACGATCGTATCAAGTGCGAACGGCACGTTCGGGACGTTCACGAGCAGTCGCGGCACCACTGCGAGCCGTGCGGCAAGGCGTACAAGTGCCGCAAGACGCTGATCCGGCACAATATTGTCGAGCATGGCATTCCGGGGCCGTACGCGTGCGATCGCTGTCCGGTGAGCTTTGCGCTGGCAGGGGAAGTCAAGGATCACCGGCGGAAGTTCCATCCGGATGGGGTGGGTTCAAGTGAGGACCAGGCGATGGAGATGGAAGAGGAAGGTGAAGCTAGCTGGGAGTGCAAGTTGGAGGTTGAAGAGCCGAAATTGGGTGGATTTGAAGACagtgaggaggaggaggaagacgaTGGAGCGAAGGCATGA
Protein Sequence: MSTPVICRVCTAPTPPDASWNLFECQAADGYSLAQLVALVGDIEVRPDEADLSAWCCVQCQLDVGAAYRVRVLCQESDRKLREMLEAAVVETSSVCQIEEDEKEESSTLQHTDAFEEIPNTKQRCCGCHQLFDTVEELVAHSTERYAVAETPMATKDREVCDVCYRLVGKRYMELHKQSPKTLFRCKACGELFLAKRHVTRHAKVCSSGQVHSPRKDQANEGSTEENATFKCSQCRKKFRTQKSLRAHEYIHHNSFSQKCTRCAEVFTDFNEYRTHLNSHRKNKHDVPKRHQCFHCPASFNHKSSMSRHVKKYHLEISASAENNHSRTEDTEEGDDTFEEEVVFKIEVEEATVEPEVAPASTGSRTEVTESGEDTIEGNVVLKIEVEDPVETQESPEEDEDMFEEDDVCKNEVEDPAKPQETPEEDEDTLDAVWEIKDGRKVDVVESENDDDDDEEAESSAVDDSPAHESELFQEIKAVDQRRCCSCLLIFPNESSLLEHAEQVHKVDDPPKEDAVNNKLCNVCYKLINKTNYVRHGRLPKTLFRCTACDDLFFSKKLVLKHYRWDHYSPRKCCTCKQKFKTVEALRQHSNEVHLPKKRKPDKNRPYSCNLCYKTFKNKGSRDNHRSRAFNYFSCSKCRKSFSLLRQLRLHEETHADPTVNVCPYCAKAFDDRIKCERHVRDVHEQSRHHCEPCGKAYKCRKTLIRHNIVEHGIPGPYACDRCPVSFALAGEVKDHRRKFHPDGVGSSEDQAMEMEEEGEASWECKLEVEEPKLGGFEDSEEEEEDDGAKA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00401270;
90% Identity: iTF_00401270;
80% Identity: -